BAC Information

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BAC

Clone NameMSMg01-061C10
Chromosome7 (Build37)
Map Location 123,207,003 - 123,207,639
singlet/doubletsinglet
Overlap geneEG668479
Upstream geneLOC668472, Sox6, LOC100042779, 1110006G14Rik
Downstream geneLOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061C10.T7 (MSMg01no061_c10.b1)MSMg01-061C10.TJ (MSMg01no061_c10.g1)
ACCAG287427AG287428
length708707
length of high quality
(start - end)
531 (41 - 571)638 (70 - 707)
definitionCHROMAT_FILE: MSMg01no061_c10.b1 PHD_FILE: MSMg01no061_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:03 2005CHROMAT_FILE: MSMg01no061_c10.g1 PHD_FILE: MSMg01no061_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CCTTGTGACATTGTGCCTATGAAAGAGAAGCTATACTCATGAAATCTCAA
TAATATGGATGCCTAAACATGACTGGAACAATGACAACACCAACTGACTT
CACAGTGTGGATGGGGGAATCTCACAGGGCCTCACCTCTAGATAAAGACC
TCTAGGAAATTAATGGCTGCTGAGACAGGGAGAATCAGTCTTCCTCAGAG
ATGAACCCTCTAATTGATGACTTAACACCAAATAATCAACCCTAAAAATA
TATACACACAAGCAATATTAAATGGGCTTAGCAGGTTGTATTTATATATG
TATTCATGACTATTGCATACATGCACAAGTTCACACACACATGCACACCA
ATCAATTAAAAGGGGTCTTAAATTTGAGAAAGAGTATAATGGGGTGGAGA
GAGAAGAGATAGGTAGGGGAATGATGTAAATACAATACATCTATATGAAG
TTTTAAAATAAAATTATTTAAGATATGGAAAAAAGAAAAGGCTGCCTCGG
TTTAATAAATGACAGCTAATTGTGGAATCTAGACATCAGGTGTGAGCAGC
ACTAGCTGCTTCTGTAACTTGCCACTCTACTCTTCTATACCGTTCCACAC
TTTACTCACTTGTTGCTCAATCACTGATCACATAGTTATTGCAAACTTGC
TATCTGAC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTTGACGTTGTAGCCATTGGCAGTAAGTTA
TAGCGGATCATAGCAGAGCAGGATCCGCTCTTCAGATGCTTACAATAACT
ATGCATCTATTTGTATGTATAAGTAGACAAGAAGACCTTGCTTTTCCCTT
ATATGTTATATGAAACCCTTTACATTTCATGTATGGATAAAGACATTGAA
ATATATAGTTAAGGTTCTGAGAGAGGTAAAACTCAAAGACCAATGTGGGA
GGCAAAGGAGAGCAATGTGCTAGACACGCTTTCCAGAGCATCTAAGCTAA
GCCTTGGGCAATACTTAAATTCCATTTCTATTAAAGACTCAGAATCTTAG
CACAACATAAAAGGAACATTTTGATGACTTAGTGTATTTCTCGTTTCTGG
TGTATATACAATTGCACACAACCATCGCCATAATCAGGACACAAAACAAT
GTATTCAAGTCCTAAGTTTCTTTCCCCAAGCCTTCTCCCTTCTCAATGCT
TGAGTAAGATATGTTCCCTGACATTAATTCTTGCCTCTTGTTGACAGTCC
TATAAGAGAAATGATTTTATTCGGCACAGGGCTTTGATCTCTACCCTTGT
CCTTGAGTGTATGTGTGGCTTGGGTCCTATCTCTATTGAGTTGCATTCCA
TTGTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_c10.g1 MSMg01no061_c10.g1 CHROMAT_FILE:
MSMg01no061_c10.g1 PHD_FILE: MSMg01no061_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:03 2005
         (638 letters)



>mm_chr7_123206803_123207840
          Length = 1038

 Score = 1224 bits (633), Expect = 0.0
 Identities = 636/637 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgacgttgtagccattggcagtaagttatagcggatcatagcagagcaggatccgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 ttttgacgttgtagccattggcagtaagttatagcggatcatagcagagcaggatccgct 778

                                                                       
Query: 61  cttcagatgcttacaataactatgcatctatttgtatgtataagtagacaagaagacctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 cttcagatgcttacaataactatgcatctatttgtatgtataagtagacaagaagacctt 718

                                                                       
Query: 121 gcttttcccttatatgttatatgaaaccctttacatttcatgtatggataaagacattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gcttttcccttatatgttatatgaaaccctttacatttcatgtatggataaagacattga 658

                                                                       
Query: 181 aatatatagttaaggttctgagagaggtaaaactcaaagaccaatgtgggaggcaaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 aatatatagttaaggttctgagagaggtaaaactcaaagaccaatgtgggaggcaaagga 598

                                                                       
Query: 241 gagcaatgtgctagacacgctttccagagcatctaagctaagccttgggcaatacttaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gagcaatgtgctagacacgctttccagagcatctaagctaagccttgggcaatacttaaa 538

                                                                       
Query: 301 ttccatttctattaaagactcagaatcttagcacaacataaaaggaacattttgatgact 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttccatttatattaaagactcagaatcttagcacaacataaaaggaacattttgatgact 478

                                                                       
Query: 361 tagtgtatttctcgtttctggtgtatatacaattgcacacaaccatcgccataatcagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tagtgtatttctcgtttctggtgtatatacaattgcacacaaccatcgccataatcagga 418

                                                                       
Query: 421 cacaaaacaatgtattcaagtcctaagtttctttccccaagccttctcccttctcaatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cacaaaacaatgtattcaagtcctaagtttctttccccaagccttctcccttctcaatgc 358

                                                                       
Query: 481 ttgagtaagatatgttccctgacattaattcttgcctcttgttgacagtcctataagaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ttgagtaagatatgttccctgacattaattcttgcctcttgttgacagtcctataagaga 298

                                                                       
Query: 541 aatgattttattcggcacagggctttgatctctacccttgtccttgagtgtatgtgtggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aatgattttattcggcacagggctttgatctctacccttgtccttgagtgtatgtgtggc 238

                                                
Query: 601 ttgggtcctatctctattgagttgcattccattgtac 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttgggtcctatctctattgagttgcattccattgtac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)