BAC Information

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BAC

Clone NameMSMg01-061H16
Chromosome7 (Build37)
Map Location 53,574,875 - 53,674,379
singlet/doubletdoublet
Overlap geneMyod1, Kcnc1
Upstream geneTrpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog
Downstream geneSergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061H16.T7 (MSMg01no061_h16.b1)MSMg01-061H16.TJ (MSMg01no061_h16.g1)
ACCAG287679AG287680
length764728
length of high quality
(start - end)
268 (46 - 313)508 (69 - 576)
definitionCHROMAT_FILE: MSMg01no061_h16.b1 PHD_FILE: MSMg01no061_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:28 2005CHROMAT_FILE: MSMg01no061_h16.g1 PHD_FILE: MSMg01no061_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,574,875 - 53,575,122)(53,673,872 - 53,674,379)
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAA
TTCAAAGCCAATACCTTAATTTGGTTGCCATATAGTAAGTTTCCATACAG
ATTTTCATGCCCCCTCACTTTAGTTAACCCTTCCTCCCTCTGGCTTCTCC
TATCCTGCAATCCACTAGCTGCTTAGACTTTCCATCCCCAGGATTTCCCC
TCTCTGTTTTCACGTACCTGGGTTCAGTTGTCCTCCACTCTCATAACAAA
TCCCTTCCCATTCTCTTTCTAGTTTCTTGGTTTCTCTGGGAACTCCACAT
TATATGCACAAAATCTGAGGTCCAAAGCCAGAGGTCCCACATATGATGGA
AAATGTGGTGCCCATTTTTCTATGTCTTAGTTAATTCACTTAATATATTT
TTCCCAGGTCCATCCATGGGCTGCTTGATATGAAGAAACCAAGCTGATAC
TGATCTGGAAGTGTGCTCCCTGCTATCTGTAGTTTCCATAACCCATGATA
GTGCTATGCAATCCTCTGGATGATAACAGGGCATTAATGCCCTTACCCAG
ATTTAAACTCATGCAACTAGAAAAACTCCTTCCACGTAAAATGTCTCCAC
TCAGGTCACAGTGTCACCTAATTTGTTATATACGGGTTAATCAGCCACCC
TTGATTGATTTTTGAACTTCTTATTCCAAATTGACATAAACCTTCGCCAG
TTTACTGAGTATTGCTGTTCCCACGCATTTTCTCCTGTTATGTTTATAAA
CTTTTTGTTTCAGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTATTTGCCACCTGCCTACTATCTACAGATCAG
CAGCAGGAGACAGCCTTCTCCTCACGGGAGCTGACAGCACAGTCCCTGTG
GCCTGTACTGCATGGAACACTCCAGCTGTATCCGAGGCCCAGCACTAAGG
GACATAGTTCTCAGAGGATGGAGACCCGACACCCCAGGAAATACAAGCTT
TCTGCTTTGAGTGTCTGACTTGGGGCTGGGAGGACTTGGGGTTCGGGGTG
AAGGACAAACAAGGTCACAGGGCAAGTGGAGACTGAGCCATTGTTGCCTG
CGAATTTCTATCCCAGCTTCTAGCCAAAGGGTCTCCAGTGGGCCCTGCTC
TTCTGGTGGTTTCCACACACTGGCATGGAAAGCTCTGCCGACCCAGCAAG
ACATTCTGTTCAGAGGAGCGTGAGGTCTCTGGGGAAGGACCCTGACCCTG
AAGCCTCTGAGTTCTCAGTGGTAGGCCAGGTCCCACTCTGCCCTAGAGCC
TCATGCTTCCCTGTGTCTCATCAGTTCCTTTAAGCAGCCATATGGACACG
GCCATGTGACCCAAGTCATTATGGCGGTGTCTCTGTGAGCCCATCTGGAC
GTTCCAGCGTGTTTCCAGCCTTATTCCGTGTGACCGATAGAGGCTTCCCG
GTGATCGGGTCCGCTTTGCCTTACTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_h16.b1 MSMg01no061_h16.b1 CHROMAT_FILE:
MSMg01no061_h16.b1 PHD_FILE: MSMg01no061_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:28 2005
         (268 letters)



>mm_chr7_53574655_53575322
          Length = 668

 Score =  449 bits (232), Expect = e-130
 Identities = 244/248 (98%)
 Strand = Plus / Plus

                                                                       
Query: 21  ttaatttggttgccatatagtaagtttccatacagattttcatgccccctcactttagtt 80
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ttaatttggttgctatatagtaagtttccatacagattttcatgccccctcactttagtt 280

                                                                       
Query: 81  aacccttcctccctctggcttctcctatcctgcaatccactagctgcttagactttccat 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aacccttcctccctctggcttctcctatcctgcaatccactagctgcttagactttccat 340

                                                                       
Query: 141 ccccaggatttcccctctctgttttcacgtacctgggttcagttgtcctccactctcata 200
           || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 341 ccgcaggatttcccctctctgttttcatgtacctgggttcagttgtcctccactctcata 400

                                                                       
Query: 201 acaaatcccttcccattctctttctagtttcttggtttctctgggaactccacattatat 260
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 401 acaaatcccttcccattctctttctagtttcttggcttctctgggaactccacattatat 460

                   
Query: 261 gcacaaaa 268
           ||||||||
Sbjct: 461 gcacaaaa 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no061_h16.g1 MSMg01no061_h16.g1 CHROMAT_FILE:
MSMg01no061_h16.g1 PHD_FILE: MSMg01no061_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:28 2005
         (508 letters)



>mm_chr7_53673672_53674579
          Length = 908

 Score =  905 bits (468), Expect = 0.0
 Identities = 498/508 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttgccacctgcctactatctacagatcagcagcaggagacagccttctcctcacggg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 708 tatttgccacctgcctactatctacagatcagcagcaggagacagccttctcctcacaag 649

                                                                       
Query: 61  agctgacagcacagtccctgtggcctgtactgcatggaacactccagctgtatccgaggc 120
           ||||||  |||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 648 agctgatggcacagtccccgtggcctgtattgcatggaacactccagctgtatccgaggc 589

                                                                       
Query: 121 ccagcactaagggacatagttctcagaggatggagacccgacaccccaggaaatacaagc 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ccagcactaaggggcatagttctcagaggatggagacccgacaccccaggaaatacaagc 529

                                                                       
Query: 181 tttctgctttgagtgtctgacttggggctgggaggacttggggttcggggtgaaggacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tttctgctttgagtgtctgacttggggctgggaggacttggggttcggggtgaaggacaa 469

                                                                       
Query: 241 acaaggtcacagggcaagtggagactgagccattgttgcctgcgaatttctatcccagct 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 468 acaaggtcacagggcaagtggagactgagccattgttgcctgcgaatttctatcccagtt 409

                                                                       
Query: 301 tctagccaaagggtctccagtgggccctgctcttctggtggtttccacacactggcatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tctagccaaagggtctccagtgggccctgctcttctggtggtttccacacactggcatgg 349

                                                                       
Query: 361 aaagctctgccgacccagcaagacattctgttcagaggagcgtgaggtctctggggaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aaagctctgccgacccagcaagacattctgttcagaggagcgtgaggtctctggggaagg 289

                                                                       
Query: 421 accctgaccctgaagcctctgagttctcagtggtaggccaggtcccactctgccctagag 480
           ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 288 accctgaccctaaagcctctgagttctcagtggtaggtcaggtcccactctgccctagag 229

                                       
Query: 481 cctcatgcttccctgtgtctcatcagtt 508
           ||||||||||||||||||||||||||||
Sbjct: 228 cctcatgcttccctgtgtctcatcagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)