BAC Information

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BAC

Clone NameMSMg01-061L11
Chromosome7 (Build37)
Map Location 119,696,008 - 119,696,463
singlet/doubletsinglet
Overlap geneParva
Upstream geneGalntl4, LOC668399, LOC100042678, Usp47, Dkk3, Mical2, Micalcl
Downstream geneLOC627808, Tead1, 4632411J06Rik, LOC434227, Arntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061L11.T7 (MSMg01no061_l11.b1)MSMg01-061L11.TJ (MSMg01no061_l11.g1)
ACCAG287861AG287862
length689750
length of high quality
(start - end)
---456 (72 - 527)
definitionCHROMAT_FILE: MSMg01no061_l11.b1 PHD_FILE: MSMg01no061_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:46 2005CHROMAT_FILE: MSMg01no061_l11.g1 PHD_FILE: MSMg01no061_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTATAACAACAGGATCCGCGGAATTCTCCTGTTCTCTGGCGGGAGG
TCAACTCCAAAGTCGGTCACTCCAACATAAAATTACAAATGAACAGTGCA
CTTCCGCATAGTTGGCCCTCTCATGACAGAGGAGAGACTTGATGGCCTGA
CACTATGAGGTGGAAGAGGTAACGTTATGGCCAGCATCCGTTCTTTACTT
TTTGAAACTAGGAAAGTTGCAACTCGGCACTTACATGTCTCCCCTAAATA
ACGGTCAATTAGGCAGCTTTAGCAACATGAACGTATTGTTGAGTGTATGA
TACACAACGAACGCGGCGAACACAATTATGACACTCAGGGTTCATACTCA
ACTCGACTACGTGTAGAACCGCCAAGGAGACACACCTTTCCCCCCCCTAC
AAGGATGTTTCCCACAGAGGGCCAGCTCAGGAACACAGACCTACCCTGAA
TGCCCACTGTCTGTGCGCTGCCCCCCGAGAGCCCAACGCCACTAACACGG
ACCGTCCGACAGCGTTCATCCTCTCTCCCCCCCTGCTTCCCACCCCCTCC
CAGGCCACAGAGCAAGCAGCCTTCCACAACACCCCCTTTCTTGCCCCCAT
GGACACCCCCCCTCACACCGTCCCGCCAAACCCCCCCTTCCTCCCCCCAA
ATTGCTTCCTTTCTTTCCTCCCCTCCTTTTCATTCCCCT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCTTTTCATTTATTTATTTATTAATTTA
ATTTTTTGTACTAGGGATTGATTGAACCCAGGGTCTTGGACATGATAGGC
AAGTGCTCTGTCATTGAGCTACCCCAAGGCCTAGTGCATCTATAACTTCT
AAGACATCTATAAACTTTTTTTCTACCAGATCATTGTGTCTGCGCTTTAA
GAAAAACTTATGCAAAAATCTGTTGCCAGAACAAAAGAGAAAGGCCCAGA
AAACAGACATAGCAGTGGTCACCTGGGAAGGCAGTGAGGTCAGGAGTGAG
GAGACCTTCTCCCAAATGCCTCAGGGTTCTGGGAAGGGCTGTTTTCCTGC
AAGCAAGCTAGACACTGGCGAGTCAGGTCTGATGCTGCCACTCGAGGGCT
CTCGAGCAGAGCACATGCCGAGGGTCATGTCTATCCCAGGTCACCTGTCT
TTTCCAGGCTGTTGGCGTCACCATCAAGCTCACATGACCCTCAGTCAAGA
CATCCCTGCCCTTGGCACCTTGCTCACTTTCCGAGTCTTTGTCCTATGAT
GTTCCCCACATGGCTGCTCCTGCTCTCCAGGCCCAACCAAGTTTAGTATA
TAAACACTCCAGCCCCCAGAGTTGGAGGTCCTATTTTCAAATGAAGCTTG
AATTTAACTTCTAACTAATCCTTTGAGAATTTGATTATTTATGCTGATTN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_l11.g1 MSMg01no061_l11.g1 CHROMAT_FILE:
MSMg01no061_l11.g1 PHD_FILE: MSMg01no061_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:46 2005
         (456 letters)



>mm_chr7_119695698_119696553
          Length = 856

 Score =  851 bits (440), Expect = 0.0
 Identities = 452/456 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttttcatttatttatttattaatttaattttttgtactagggattgattgaacccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ttcttttcatttatttatttattaatttaattttttgtactagggattgattgaacccag 707

                                                                       
Query: 61  ggtcttggacatgataggcaagtgctctgtcattgagctaccccaaggcctagtgcatct 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ggtcttggacatgacaggcaagtgctctgtcattgagctaccccaaggcctagtgcatct 647

                                                                       
Query: 121 ataacttctaagacatctataaactttttttctaccagatcattgtgtctgcgctttaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ataacttctaagacatctataaactttttttctaccagatcattgtgtctgcgctttaag 587

                                                                       
Query: 181 aaaaacttatgcaaaaatctgttgccagaacaaaagagaaaggcccagaaaacagacata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aaaaacttatgcaaaaatctgttgccagaacaaaagagaaaggcccagaaaacagacata 527

                                                                       
Query: 241 gcagtggtcacctgggaaggcagtgaggtcaggagtgaggagaccttctcccaaatgcct 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gcagtgggcacctgggaaggcagtgaggtcaggagtgaggagaccttctcccaaatgcct 467

                                                                       
Query: 301 cagggttctgggaagggctgttttcctgcaagcaagctagacactggcgagtcaggtctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 466 cagggttctgggaagggctgttttcctgcaagcaagctagacactggtgagtcaggtctg 407

                                                                       
Query: 361 atgctgccactcgagggctctcgagcagagcacatgccgagggtcatgtctatcccaggt 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 atgctgccactcaagggctctcgagcagagcacatgccgagggtcatgtctatcccaggt 347

                                               
Query: 421 cacctgtcttttccaggctgttggcgtcaccatcaa 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 346 cacctgtcttttccaggctgttggcgtcaccatcaa 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)