BAC Information

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BAC

Clone NameMSMg01-061M10
Chromosome7 (Build37)
Map Location 140,592,674 - 140,752,842
singlet/doubletdoublet
Overlap geneLOC668747
Upstream geneLOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2
Downstream gene4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1, Adam12, A130023I24Rik, 4933400E14Rik, LOC100043248, LOC100043699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061M10.T7 (MSMg01no061_m10.b1)MSMg01-061M10.TJ (MSMg01no061_m10.g1)
ACCAG287906AG287907
length734742
length of high quality
(start - end)
290 (66 - 355)340 (69 - 408)
definitionCHROMAT_FILE: MSMg01no061_m10.b1 PHD_FILE: MSMg01no061_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:51 2005CHROMAT_FILE: MSMg01no061_m10.g1 PHD_FILE: MSMg01no061_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,592,674 - 140,592,963)(140,752,509 - 140,752,842)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXAATCGTNGAGGTCCGCGGAATTCCTT
TGATTACTCAAACATGTCGTCCTAAGAATCAAGACAGACTCTAGCCACTC
TGGTATGCTACCCCATCTCCCAAGAATGTCCCTAGAGAGGTATTTTGAGA
AAGAATTTTATCTGATCACTACAGGCAATGATCAAAGAAAACTAATTCCA
CTGTGTTTGTTACGACAACATCAGTAAAAGAAGTCAGGGACAGAGTCTCT
GGAGGAGCATAAAGTATGCAATAAAGGGCGATGTATAATTAATGAACATC
ACATCTCTTCATAGTGCTCTCAGACCCAAAGACAGTGGGCAGAGACTGGT
TGAAGAGGAGACAGGCAGAAAGGCTGAGTGCTTTTTTTTTTTTTCCCAAA
GGAAGTTATCCCCCAAAAGAGAAAGGAACCCAGCAACATTGAAATGTGAC
CGTGATGCTGTGGTCAGTCTGAATCTCCATATCTCGTCTCCACTGATCTG
TCAGAGACAACCGCCTGGCGCATCTGTACTGTGTTTCACAGCTCTGGGAA
TCTCAGTGTTGTCAAAGCCCCCGGTTATTCTGTTGCATGTCAAGCCTTGT
TGAACTGCTTGCCCATTTCCTCCTGGCCCAGTCCCATTGTTTTTGTTTCC
TTGATAAGCCCCGAAACATCCTCGTATTTTTGCCCATTTTCTTCCACATA
TACCCCCTTTACCCCTTAACCTTTGTGTCGATCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCTGTCTACTACCCAGCTTGAGTAGTAGTGG
CCAACCCCATCTCACCTGGCACCACTGATCTCTTACAGGACAGTATTGAG
AACCAAATCTGTCCATTTTCAGACCCTAAACAGCTTGCCAAGACGTTCAC
CCAGTGTGTAGTCACACTTGCTCTGCCCCGTTCACAGAGAAATCCTTAGC
TTTTGCTTCCATTGGATGATTAGTGAACTGCAGGGAGGTCTTTGGAGAAG
ATCAGGATATTTGACAGCTCCGTGTGTTTTGCTTCCACAAACACTGAGAA
CTGAGATGAGCTTGCCTCTTTGAGCCCTTAACAATGTACAGATAAGGGAA
GGACATCACCCCTTTTTAGTTTGCTGAGACTCTACAAGAACTGTTGAACA
TTTCAAAAGTAATGATGCAAGAATTGTTGCCAGCCAAAATGGCTGCCTAC
AGGTTGCTAACGTATCTTCATCATCTCTACATCTGACTCAATGCTAATAC
CCCCAAATCTATATTAGAACTCAGGAACGCATTACTTATTTACCCTCATA
AATCCTCCTACAAAACTGGCCCCCGAATGTATATTGTATTCTTCTTTACA
GTAACCTTTGATTGGCCTACACACCCTTTTGCTACTGTTTCCTTTCCCTT
CGATATCTAGTTATTTTTTTCGTCCTCTTCCCTACTTTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_m10.b1 MSMg01no061_m10.b1 CHROMAT_FILE:
MSMg01no061_m10.b1 PHD_FILE: MSMg01no061_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:51 2005
         (290 letters)



>mm_chr7_140592474_140593163
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcgtcctaagaatcaagacagactctagccactctggtatgctaccccatctcccaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcgtcctaagaatcaagacagactctagccactctggtatgctaccccatctcccaaga 260

                                                                       
Query: 61  atgtccctagagaggtattttgagaaagaattttatctgatcactacaggcaatgatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtccctagagaggtattttgagaaagaattttatctgatcactacaggcaatgatcaa 320

                                                                       
Query: 121 agaaaactaattccactgtgtttgttacgacaacatcagtaaaagaagtcagggacagag 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 agaaaactaattccactgtgtttgttacgacaacagcagtaaaagaagtcagggacagag 380

                                                                       
Query: 181 tctctggaggagcataaagtatgcaataaagggcgatgtataattaatgaacatcacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctctggaggagcataaagtatgcaataaagggcgatgtataattaatgaacatcacatc 440

                                                             
Query: 241 tcttcatagtgctctcagacccaaagacagtgggcagagactggttgaag 290
           ||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccacatagtgctctcagacccaaagacagtgggcagagactggttgaag 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no061_m10.g1 MSMg01no061_m10.g1 CHROMAT_FILE:
MSMg01no061_m10.g1 PHD_FILE: MSMg01no061_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:51 2005
         (340 letters)



>mm_chr7_140752309_140753048
          Length = 740

 Score =  615 bits (318), Expect = e-180
 Identities = 330/334 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctgtctactacccagcttgagtagtagtggccaaccccatctcacctggcaccactga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 534 ctctgtctactacccagcttgagtagtagtggccaaccccatctcacctggcaccattgt 475

                                                                       
Query: 61  tctcttacaggacagtattgagaaccaaatctgtccattttcagaccctaaacagcttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tctcttacaggacagtattgagaaccaaatctgtccattttcagaccctaaacagcttgc 415

                                                                       
Query: 121 caagacgttcacccagtgtgtagtcacacttgctctgccccgttcacagagaaatcctta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 414 caagacgttcacccagtgtgtagtcacacttgctctgccccgttcacagagacatcctta 355

                                                                       
Query: 181 gcttttgcttccattggatgattagtgaactgcagggaggtctttggagaagatcaggat 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gcttttgcttccgttggatgattagtgaactgcagggaggtctttggagaagatcaggat 295

                                                                       
Query: 241 atttgacagctccgtgtgttttgcttccacaaacactgagaactgagatgagcttgcctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atttgacagctccgtgtgttttgcttccacaaacactgagaactgagatgagcttgcctc 235

                                             
Query: 301 tttgagcccttaacaatgtacagataagggaagg 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 tttgagcccttaacaatgtacagataagggaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)