BAC Information

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BAC

Clone NameMSMg01-062D13
Chromosome7 (Build37)
Map Location 27,553,090 - 27,553,731
singlet/doubletsinglet
Overlap geneCyp2b19
Upstream geneAxl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830
Downstream geneCyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062D13.T7 (MSMg01no062_d13.b1)MSMg01-062D13.TJ (MSMg01no062_d13.g1)
ACCAG288246AG288247
length1,1711,187
length of high quality
(start - end)		642 (124 - 765)682 (139 - 820)
definitionCHROMAT_FILE: MSMg01no062_d13.b1 PHD_FILE: MSMg01no062_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:35 2005CHROMAT_FILE: MSMg01no062_d13.g1 PHD_FILE: MSMg01no062_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATACTTTTTNTGCCCAGTGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTTTAAAGGGCCCCGCTAAAAGAAACTCTATCTAGACAG
ATTCCTTATCTTTGCCTTTAAAGGAGAGTCCAACACAGAACTCCTTAGAC
CTTTTCATTCTGTGGTGATGATTGAACCTAGGGTTTGCAAATGTTAGGTA
GGGGCTCTACCACTCAGCCACTCCCCCAGCACCTTACTGGGGGATTCTAG
GCAGAGGCTTCACCACTGAGCCACTCCCCCGGACCCAGTCTAGAGTTGAG
TGTCTTAGTAAGTTCAGTGACTCAGGGCTCAACTCTACCCTGAAATATCC
AATGTATTGGATCTCTCCACTATTTAATCTTTATTCAGTGTGGGGACAAG
TTATTGGATAAAAGTGAATGTCTCCATTCCATAGTTGTAAATTTAGAGGG
AGACAAGAATGAGATACATAAGGCTAGAGACAGAGAGTAGATGATAGAAA
GATAACAAAATTCAAACAGGAGGCACAGGGAGACTAGAACAAGCTGTACT
AGTCCACATTATCTGTCAATGTGCAAACATAGAATTACCTGAGAAAAGAG
TTTCAATTGAGGACTTGCCTATATTAGCATGATCTGCTCCTTGACTGTTA
ACTGATATGGAAAGACCTAGCCCATTGTGAGTGGCATTAGTCTTTGTTTG
AGGCCCTGAAAAAGAGGCAAGATCGAAACTGAGCTCCATGGAAGTAGGCA
GCATGCTCTGGACTGTGGGTGTGGGGGTGGCCAGCTGTCCCAGCTCTTGT
TTCTTTGACATCTCTGGCATGACAGTCAGTCTTCTGAAATTGTAAGTCAA
AGAGAGGCCCTTCCTCATCCATGTTGATTTTGTTGGGATATTTGTCACCA
CAACAGATTTAAAAACAGGGACCTAGAAGAGGCTTTTTATGAGAGATACC
CAGTGGAGTGTGACGGTAGTAAAAAAGGAATGGAGGGTGTGATAAGGAGC
TATGGGTATTAGAACATGATTTAAAGGATGTTGGTAAATTGAATTATATT
ATTATCCTCTTTTTAAATATTTCTTATGGGGATTTTATGGAGGATTTCTT
TTTTTTGTATTACTCTTTTCGGTTTATATCTACTTGTTTTTAATAACTTC
CTGCTCTTTCTTCATTTTCTT

CCAACCCTTTTTTNTACCATGGGAGGCTGGGGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGCCCTTAAAAAACCCCTAGAAAAAT
AGCCCGGGAGCCAACGGCCTTACAACACCGCTACAACATGAGATCGACAT
GGGATTCCTTTTGACTCACCCCCGTTGCGACTGCAACATGGCCAAAGGTA
GGGAGAGCTTAAAAAAATCTATCACCAGGCTCTGGTCTCCAAGGTGCCTC
AAGATGGGCCCACTAATTTGGCTAAGGTAAGAGGTAATGCAGGGGCCGAT
CGAACCTCCCTCAGTATTCCTTGAAAGGCTTATGAAAGCCTTCAGGCGGC
TCACTCCCTTTGATCTTACCTTGGAAGCCCAGAAGGCCTCAGTGGCCCCC
AATATCTTAAAGAAACTTCAGAGATTAGAAGGTGTATTACAAGAGGGAGA
CAGTTACGCGATCTAGTGAAAGAGGCAGAGAAAGTGTGTGTGTGTGAGAA
AGAGAGAGGTGGGAGGCAGAAGAAAGAGAAAACAGGAGGGATCATAGACA
AAAAAGAAATTTGACTAGAATCTTGGCCACAGTGGTAGGAGAGAAAGAAA
AGACAGGATCTAGACAGGAAACCTGGGCAACAGAAGGCTGAGCCTCAGCT
AAAAAGGCTCAGCTGTGTCAGACTGAAGTTACTTATTTGGGATACACCCT
TTGAGACGGGAAGCAGTGGCTAAAGAAAGTCAGAATAAAGACTGTAACTC
AGATCCCCACCCCAACTACACCAAGGCAAATAAGAGAATTCTTGGTTACT
GCTGGCTTCTACAGACTCTAGATACCTGGGTCGGCGACCTTAGCTGCCCT
GTTGTACCCACTAACCAAGGAAGTGTAGGCGTTTGTGTGGACCCCCATAT
CATCAGAAAGCCTTTGAAAAAATTAAAAAGGCCCTACTGATGGCCAGGCT
TGACCTTTGCCTGACCTAACCAGCCTTTTCATTCTTGGAAAAAAAAAAGA
CCAGTGGAAACCCGAAAAAGTCCTTAATTCAAACTTTGGNAACTTTGAAA
AAAGGCCCGTGGGTTTTACCTTATCCCGGAATTTATAAACCTGGTTTGCC
ACAAAGGTGGGTTTTCTTTGCCTTAAAAGCCTATTTGTTGCCCCATACTC
CTGGTTTGGTCAAGGAAATTCTTAAAAACTCCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_d13.b1 MSMg01no062_d13.b1 CHROMAT_FILE:
MSMg01no062_d13.b1 PHD_FILE: MSMg01no062_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:35 2005
         (642 letters)



>mm_chr7_27552890_27553931
          Length = 1042

 Score = 1180 bits (610), Expect = 0.0
 Identities = 634/642 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagagtccaacacagaactccttagaccttttcattctgtggtgatgattgaacctaggg 60
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagagtccaagaaagaactccttagaccttttcattctgtggtgatgattgaacctaggg 260

                                                                       
Query: 61  tttgcaaatgttaggtaggggctctaccactcagccactcccccagcaccttactggggg 120
           |||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||
Sbjct: 261 tttgcaaatgttaggtaggggctctaccactcagacactcccccagcccctcactgaggg 320

                                                                       
Query: 121 attctaggcagaggcttcaccactgagccactcccccggacccagtctagagttgagtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attctaggcagaggcttcaccactgagccactcccccggacccagtctagagttgagtgt 380

                                                                       
Query: 181 cttagtaagttcagtgactcagggctcaactctaccctgaaatatccaatgtattggatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttagtaagttcagtgactcagggctcaactctaccctgaaatatccaatgtattggatc 440

                                                                       
Query: 241 tctccactatttaatctttattcagtgtggggacaagttattggataaaagtgaatgtct 300
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 441 tctccactatttaatctttattcagtgtggggacaagaaattggataaaagtgaatgtct 500

                                                                       
Query: 301 ccattccatagttgtaaatttagagggagacaagaatgagatacataaggctagagacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccattccatagttgtaaatttagagggagacaagaatgagatacataaggctagagacag 560

                                                                       
Query: 361 agagtagatgatagaaagataacaaaattcaaacaggaggcacagggagactagaacaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagtagatgatagaaagataacaaaattcaaacaggaggcacagggagactagaacaag 620

                                                                       
Query: 421 ctgtactagtccacattatctgtcaatgtgcaaacatagaattacctgagaaaagagttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtactagtccacattatctgtcaatgtgcaaacatagaattacctgagaaaagagttt 680

                                                                       
Query: 481 caattgaggacttgcctatattagcatgatctgctccttgactgttaactgatatggaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caattgaggacttgcctatattagcatgatctgctccttgactgttaactgatatggaaa 740

                                                                       
Query: 541 gacctagcccattgtgagtggcattagtctttgtttgaggccctgaaaaagaggcaagat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gacctagcccattgtgagtggcattagtctttgtttgaggccctgaaaaagaggcaagat 800

                                                     
Query: 601 cgaaactgagctccatggaagtaggcagcatgctctggactg 642
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cgaaactgagctccatggaagtaggcagcatgctctggactg 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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