BAC Information

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BAC

Clone NameMSMg01-062K15
Chromosome7 (Build37)
Map Location 24,126,831 - 24,127,511
singlet/doubletsinglet
Overlap geneNlrp4e
Upstream geneLOC100043048, LOC100043632, EG667485, V1rd14, LOC100043051, LOC100043058, EG435947, EG667504, EG667512, LOC100043061, LOC100043638, LOC667527, EG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664
Downstream geneLOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062K15.T7 (MSMg01no062_k15.b1)MSMg01-062K15.TJ (MSMg01no062_k15.g1)
ACCAG288585AG288586
length1,1561,145
length of high quality
(start - end)
717 (51 - 767)586 (76 - 661)
definitionCHROMAT_FILE: MSMg01no062_k15.b1 PHD_FILE: MSMg01no062_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:29 2005CHROMAT_FILE: MSMg01no062_k15.g1 PHD_FILE: MSMg01no062_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:29 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCATTCATTTTTTTACATTGGGCGCTAAXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATAGGTGCATGGCTACATTTTCCATTCTTCAATAATCCAG
AACCCAAACCCAGGGTACTGGTGCTGTCCTCTGTGCCCTGGGTCTTCACA
GACTAATTAGCATAATCAAGACAATTCCTTAGAGACATTCTCATGGGTCC
ACCTAGACAATAAAGGATAGGGAGTATCTTTTATTGATACTTCTCAGGTG
AATATCATTGTTTTAGGGTGACAGCTAACACTATCCATCATAATATGAAA
TATATAGGAATACATGACATGAAAAATCACACCATCATTGGTCCTACCCA
AAACGCGAAACCTCTTTCCTGAGTTCTAAAGCCCTTAATTTTCTTCCTTG
TTAGCCTACTCATTTATTCCACCCACAATTACAAGAGAGGTTCATTCAGT
ATTAGATGAAGTTTAGGGGTTCATGGGCATTATACTTTGTGTCCCATTCT
GCATGCCAAAACCAAGTTACTGACACAAGTCTGTGTGCCTGCTACAGCAC
TTTAATCTAGTCAAATAGCTTTTGAAATTTAGTACAAGAAACCCTTGATA
TCTATGGGTAGCAGGGGTGAGTGTGGATGTGGGGTCAGGGTCACTATGGT
GTAAAACTCTGCAGGTACTCAAGAGCTGTATGTACAGTGGTTCAGCATGT
GTCCATCTTGTCGTTACTCTCCCATATACTAGTTCCAACCTCCTCCAGTC
TTCTTATAATATACAATACAATTTAAACACCAAGTAACTGTTAACAAAAT
ATAATCTAATAATGTTAAGTTCAGAACCAACTGAAAAATTTAATGATTAC
AATTGTGTACATGTGAATATGTTGTTTGCAGGAACTTCTTATTCCCCTAC
TATGCGTGTTGAAGGTCATATAACTACTTTGTGTATTTGGTTCTTTCCTT
CCACCTTTAAGGGTTTTTTTAAAACGCTTGACCCTGAACTTTTAAATTCT
TCTTTTCTCCCCCTTCTTCTAGGTTTTTATATCCATAAGGTCTTGTATTA
ATTCTTCTAAATTTTTTATTTTTTTATATTTATCCTTCTTTTCTTTTCTC
ATTCTATGCTTTTATTATTTTTCTCTCTTTTTTACTATCTAATCGCTTTT
TTATTT
CCGTTTTTTTTTTAAAGAGGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTTGAATATTAAACCATCCCT
GCATCCCTGGAATGAAACCTACTTGGTCAGGATGGCCCATTGTTTTGATG
TGTTCTTGGATTCGGTTAGGGAGAATTTTATTGAGTATTTTTGCATCAAT
AGTCATAAGGGAAATTGGTCTGAAATTCTCTATCTTTGTTGGGTCTTTTT
GTGGTTTAGGTATCAGAGTACTTGTGGCATCATAGAATGAATTGGGTAGA
GTAACTTCTGCTTCTATTTTGTGGAATATTTTGTGCAGTACTGGAATTAA
GTCTTCTTTGAAGGTTTGATAGAACTCTGCACTAAACCCTGGCTAAATCC
TGGTCTGTTTTTGGTTGGGAGACTCTTAATGACTGCTTCTATTTCTTTAG
GGGATATAGGACTGTTTAGATCATTAACCTGATCTTGATTTAACTTTGGT
ACCTGGTATCTGTCCAGAAATTTGTCCATTTCATCTAGGTTTTCCAGTTT
TGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTCTT
CAGGGTCTGTTGTTAGCCTCCTTTTCATTTCTGATTTTGTTAATTAGGAT
GCTGTCCCCGTGTCCTCTAATGAATCTGGCTAAGGGTTTATCTATCTTGT
TGATTTTTCTGAAAGTAAAAGCTCCTTTGTTGGTTGATTCTTTGAATAGT
CCTTGTTTCCCTTTGTTTGTTTTTCACCTCTGAGTTTGATAATTTCCTGC
TGTTTATACCTCTTGAATGAATCTGCTTTCCTTTTTTTCTAATATTTTTT
TTTGTTGTTTTCTATTGTTTTTGTTCGTTCTTCTTTCTTTCTTTTTTCTA
GTTTTCTTTTTTCTTATTTTCTCTTTATCTTTTCTTCTCTGTTTTTTTAC
TTTTTTATTTTCCTTTTTTTTTTTTTATTATTTTATTATTATTTTTTTTT
TTTTTATTTTTTTTTTTTTTCTTTTTTTTTTTATTTTCTCNTCTCTTTTT
CTCTTTTTTTCATTTTTCTTTTATTTTATTTTATTCTTTATTTCTCCTTT
TTCTTTTCTTTTAATTTCTCATCTTTCTTTTCTTCTCTTTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_k15.b1 MSMg01no062_k15.b1 CHROMAT_FILE:
MSMg01no062_k15.b1 PHD_FILE: MSMg01no062_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:29 2005
         (717 letters)



>mm_chr7_24126389_24127511
          Length = 1123

 Score = 1139 bits (589), Expect = 0.0
 Identities = 655/681 (96%), Gaps = 10/681 (1%)
 Strand = Plus / Minus

                                                                        
Query: 47   ccagaacccaaacccagggtactggtgctgtcctctgtgccctgggtcttcacagactaa 106
            |||| |||||||||||||||| ||||||||||| |||||  |||||| ||||||||||||
Sbjct: 1123 ccaggacccaaacccagggtaatggtgctgtccactgtgggctgggtgttcacagactaa 1064

                                                                        
Query: 107  ttagcataatcaagacaattccttagagacattctcatgggtccacctagacaataaagg 166
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1063 ttagcataatcaagacaattccttagagacattctcatgggcccacctagacaataaagg 1004

                                                                        
Query: 167  atagggagtatcttttattgat----acttctcaggtgaatatcattgttttagggtgac 222
            ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||
Sbjct: 1003 atagggagtatcttttattgatactcacttctcaggtgaatatcattgttttagggtgac 944

                                                                        
Query: 223  agctaacactatccatcataatatgaaatatataggaatacatgacatgaaaaatcacac 282
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 943  agctaacactatccatcataatatgaaatttataggaatacatgacatgaaaaatcacac 884

                                                                        
Query: 283  catcattggtcctacccaaaacgcgaaacctctttcctgagttctaaagcccttaatttt 342
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 883  catcattggtcctacccaaaacgccaaacctctttcctgagttctaaagcccttaatttt 824

                                                                        
Query: 343  cttccttgttagcctactcatttattccacccacaattacaagagaggttcattcagtat 402
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823  cttccttattagcctactcatttattccacccacaattacaagagaggttcattcagtat 764

                                                                        
Query: 403  tagatgaagtttaggggttcatgggcattatactttg----tgtcccattctgcatgcca 458
             ||||||||||||||||||||||||||||||||||||    |||||||||||||||||||
Sbjct: 763  gagatgaagtttaggggttcatgggcattatactttgtgactgtcccattctgcatgcca 704

                                                                        
Query: 459  aaaccaagttactgacacaagtctgtgtgcctgctaca-gcactttaatctagtcaaata 517
            ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
Sbjct: 703  aaaccaagttactgacacaagtctgtgtgtctgctacaggcactttaatctagtcaaaca 644

                                                                        
Query: 518  gcttttgaaatttagtacaagaaacccttgatatctatgggtagcaggggtgagtgtgga 577
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643  gcttttgaaatttagtacaagaaacccttgatatctatgggtagcaggggtgagtgtgga 584

                                                                        
Query: 578  tgtggggtcagggtcactat-ggtgtaaaactctgcaggtactcaagagctgtatgtaca 636
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 583  tgtggggtcagggtcactatgggtgtaaaactctgcaggtactcaagagctgtatgtaca 524

                                                                        
Query: 637  gtggttcagcatgtgtccatcttgtcgttactctcccatatactagttccaacctcctcc 696
            |||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 523  gtgggtcaccatgtgtccagcttgtcgttactctcccatatactagttccaacctcctcc 464

                                 
Query: 697  agtcttcttataatatacaat 717
            |||||||||||||||||||||
Sbjct: 463  agtcttcttataatatacaat 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1123
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1113
Effective search space:   786891
Effective search space used:   786891
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)