BAC Information

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BAC

Clone NameMSMg01-063B08
Chromosome7 (Build37)
Map Location 115,509,966 - 115,510,225
singlet/doubletsinglet
Overlap genenone
Upstream geneSyt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493
Downstream geneOlfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063B08.T7 (MSMg01no063_b08.b1)MSMg01-063B08.TJ (MSMg01no063_b08.g1)
ACCAG288906AG288907
length777773
length of high quality
(start - end)
265 (107 - 371)241 (142 - 382)
definitionCHROMAT_FILE: MSMg01no063_b08.b1 PHD_FILE: MSMg01no063_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:18 2005CHROMAT_FILE: MSMg01no063_b08.g1 PHD_FILE: MSMg01no063_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:18 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCTCAT
TTGACCCCAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCCCAACATTTTACTTCCTATTTAAAACTTTACTCA
AATAAAAGTGTTTCCTACTGTAAAATGGAAACTATAAAAGACTTAACTGC
AGGTTGAAGGCTGGTGACACAGATCTTTAATCTTGGCACTCAGGAAGCAG
AGACAGGAAGTTCTCTGTGAATTCAAGACCAGCCTGGTCTATATAGCAAG
AAAGCCAGAACTACACATGGTAAATCCTATTTTGAAAAACTGAAAAAGCA
AAAGAAGTAATTAATATTTACTAAAAATAACAATATATAAATACATTTTC
AACATTCCTGTGATGGTGATTATTTTAACCCCCCCCCCCCTTTTAGCAAG
GATTAAGTCTTCATGGTATAATCCCATAATTTTATAATACAATCATCTGT
TATAATAAGCATTTTCCATTTTGAAAAGACTTGCATAATTTTTATGCAAT
TCATCCTTTTATTTCCAGCTAAGAGAATGGTGTACGGTAACATAACATAA
CCTGCTCATAAAGGATCAGCATGCACGAATTTAGTTTCCTCCCTCTCTCA
CCCACCGAAGCCCACAGACAATAAATTCTACCTAACCCATGCGTCACGGT
TCATAAGGTAAAAACTATTTTATCACTAAACCGCCCTAATCTCCCTCGTC
ATAATCTTTCACGAATTTTATCATCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCNCNNCC
CCCACTCCNCTCAAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAG
GAATCTCGAATGGCTGAGAAGCACCTACAGAAATGTTCAATATCCTTAGT
CATCAGGGAAATGCAAATCAAAATGACCTGGGATTTCACCGTACATCAAT
CAGAAAGGCTAAGATAAAAAACTCACTTGATAGCAGATGATATTGAGGGT
ATGGAGAAAGAGGAACACTCTTCCATTTCAGGTAGGATTCCAAACTGGTA
AAACCACTCTAGAAATCAATCTGGAGGTTTCTCATATAATTGAAAATAGA
TCTACCTGAAGTCCCAGCTATATTTTTTTTGTCCCCCCACCCCCACCAGA
TGCCCTACCATGTCTCACAGGCTTAGGCTACCATATGGACATAAAGAGCG
TTATCTGTGATATCCCGTAACATGTAAACCACCCACATTTCCCACTATGC
ACGACCGTTTACAGAACACGTGTCTTCATTTACACCCAGCGATACAATTC
TGCTCTTAAAATATGTGTACACCTTGTACTTTTCGCATTTAATTGTACAG
TACCTACTATAATACTATCCTCGTTCCAACGTTATTTCTTTCACACCCCG
GCTTACCCTGGCACATGGCCCCCCCCAAACATTACTTTGCTCAAACAAAC
GTTCGCCCTTTCTTACATCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_b08.b1 MSMg01no063_b08.b1 CHROMAT_FILE:
MSMg01no063_b08.b1 PHD_FILE: MSMg01no063_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:18 2005
         (265 letters)



>mm_chr7_115509762_115510427
          Length = 666

 Score =  435 bits (225), Expect = e-126
 Identities = 252/261 (96%), Gaps = 2/261 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcc-caacattttacttcctatttaaaactttactcaaataaaagtgtttcctact 63
           ||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacaacattttacttcatatttataactttactcaaataaaagtgtttcctact 264

                                                                       
Query: 64  gtaaaatggaaactataaaagacttaactgcaggttgaaggctggtgacacagatcttta 123
           |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 gtaaaatggaaattataaaagacttaactgcaagttgaaggctggtgacacagatcttta 324

                                                                       
Query: 124 atcttggcactcaggaagcagagacaggaagttctctgtgaattcaagaccagcctggtc 183
           || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 atattggcactcaggaagcagatacaggaagttctctgtgaattcaagaccagcctggtc 384

                                                                       
Query: 184 tatatagcaagaaagccagaactacacatggtaaatcctattttgaaaaactgaaaaagc 243
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| 
Sbjct: 385 tatatagcaagaaagccagaactacacatgg-aaatcctattttgaaaaactgaaaaagt 443

                                
Query: 244 aaaagaagtaattaatattta 264
           |||||||||||||||||||||
Sbjct: 444 aaaagaagtaattaatattta 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 666
Length adjustment: 9
Effective length of query: 256
Effective length of database: 657
Effective search space:   168192
Effective search space used:   168192
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)