BAC Information

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BAC

Clone NameMSMg01-063N21
Chromosome7 (Build37)
Map Location 50,577,423 - 50,577,701
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715
Downstream geneSiglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063N21.T7 (MSMg01no063_n21.b1)MSMg01-063N21.TJ (MSMg01no063_n21.g1)
ACCAG289497AG289498
length708660
length of high quality
(start - end)
194 (52 - 245)279 (55 - 333)
definitionCHROMAT_FILE: MSMg01no063_n21.b1 PHD_FILE: MSMg01no063_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:24 2005CHROMAT_FILE: MSMg01no063_n21.g1 PHD_FILE: MSMg01no063_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGGCGCTATACGACTCCTATCGGGAGAGGATCCGCGGAATTCCAACTG
AGTGAGGTAACTCAGACCCAAAAGGTATGTACTCACTGATAAGTAGATAT
TAACCAAAATACAGAATACCCAAGACATAACACACAGGACTCATGAAGGG
TCACAGCATAAGGACCCAAGTGATGTTGCCTCAAACCCACTAGGGTGGGA
GAAGAAAGTGATAATGGGGTGAAGAGGAAGGGGAAGGGGAAGGAAATGAT
CTGTCTGCTTACTGATCTTTCTCTTTTTTATTTTTTTTTTTTTATATCCC
CCTTTCTTTTTTCTCCTATCACCCCTCTCCCTTCCTCCTACTACTTTTTT
TTTCCTCCCCCCCTCCCCCTTCCTTATTCATTTCTTTCTTCTCCTTACCC
CCTTCCCCCACATCTCATACCTACCTTTTGTTTGCTTTTTGTGATTTCCT
TTCTTTATCCCACCCTCCTTCACCTTTTTTTTCTTTCTCTCTATTATCCT
CTACTCCCTAACTTCTTCTATATTTTCTTCACTATCCTTGCCCTTTTTTA
ATTTTTCCTTTCTCCATCTACTATTTTTTTATCTATCTATCCCCCCATAT
TTCCCCTACTTATTCAACATCTCCCCTTTTCTCCTCCTTCCCCTTCTTTT
TATATTTTATTCTCTTTACTTTTATTTCTTCTCTCCTCTCTATTCACTTC
CACCTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCAGCTCCTCCAGCTCCATGCCTTCCTGGATGTTGCCTTGATGACT
ATGAACTGAACCTCTGAATCTTTATGCCAGCCCCAATTAAATGTTGTTCT
TTATAAGACTTGCCTTGGTCATGGTGTCTGTTCACAGCAGTAAAACCCTA
ACTAAGACAATCGTACTCTATGATTTACATAATCGTGGTTGTACTCAATT
ATGTCTGAGAGAATAGGTTTCATTTTTTAAAATTTGAACAGAAAAAGTGA
GGTGTTGGGGATTGGTTCTAATGATTTAATTCAATATTTAATCTGTGTCC
AAATGCTTGAAGGTCCTTGTCCCCAACTGGTTTTTGATCAATCAATAAAG
ATGCCAATGGCTGGGCACAGGGCACAGTACTTAGAGTTGTGCAGGCTAGG
ATGCATAGAGGAACTGAGCATAATCTAGAGGATTCAGTAGGAGCAGCGAG
AGGAGAGCTGCAGGAGAGAGAGTCAACGAGCCATGTGAGAATTCTGATGG
GTGTTCCTGATTGGCCCCGGCGTATCATGAGAAGGTTTAGGGGTGCCCAG
CCTTTGACGCATCCCAGGTGTTTTAAAAAAACCCTAATGGTTGTATGCCC
TTCTGAAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_n21.g1 MSMg01no063_n21.g1 CHROMAT_FILE:
MSMg01no063_n21.g1 PHD_FILE: MSMg01no063_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:24 2005
         (279 letters)



>mm_chr7_50577068_50577746
          Length = 679

 Score =  540 bits (279), Expect = e-158
 Identities = 279/279 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagctcctccagctccatgccttcctggatgttgccttgatgactatgaactgaacctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tcagctcctccagctccatgccttcctggatgttgccttgatgactatgaactgaacctc 575

                                                                       
Query: 61  tgaatctttatgccagccccaattaaatgttgttctttataagacttgccttggtcatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tgaatctttatgccagccccaattaaatgttgttctttataagacttgccttggtcatgg 515

                                                                       
Query: 121 tgtctgttcacagcagtaaaaccctaactaagacaatcgtactctatgatttacataatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgtctgttcacagcagtaaaaccctaactaagacaatcgtactctatgatttacataatc 455

                                                                       
Query: 181 gtggttgtactcaattatgtctgagagaataggtttcattttttaaaatttgaacagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtggttgtactcaattatgtctgagagaataggtttcattttttaaaatttgaacagaaa 395

                                                  
Query: 241 aagtgaggtgttggggattggttctaatgatttaattca 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aagtgaggtgttggggattggttctaatgatttaattca 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)