BAC Information

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BAC

Clone NameMSMg01-064J08
Chromosome7 (Build37)
Map Location 104,683,914 - 104,684,216
singlet/doubletsinglet
Overlap geneInts4
Upstream geneOdz4, Nars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14
Downstream gene1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064J08.T7 (MSMg01no064_j08.b1)MSMg01-064J08.TJ (MSMg01no064_j08.g1)
ACCAG290014AG290015
length733732
length of high quality
(start - end)
310 (46 - 355)95 (103 - 197)
definitionCHROMAT_FILE: MSMg01no064_j08.b1 PHD_FILE: MSMg01no064_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:38 2005CHROMAT_FILE: MSMg01no064_j08.g1 PHD_FILE: MSMg01no064_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCAAAATGTAATGAACAAGTTCTATTGGTTAATCAGGTGGCAAA
CAAAATTCATAGATGTGCAGAAATGATTATTAGGATGCATTTTTCCAAGA
TTAGATAGATGATAAGCTATCCTCACATGAGAGATGCGATGAAGACTGCA
AGTGAGCCCTGCGATTCCAGCCACCCCTCTCTCTTTCCTACCATCCATTC
ATGCATTGTGTGCTTTCTTTAGTGTACACCACACTAAGTGCTGGAGCTAT
GGGGAGGCGATGAAGGTCAGTGCTTCAGCACACAGTTAGGCACACTGTAG
GTCAAATTTTTTAAGGCCCCGCCCACGGTCCCAGCAGGTGGTACAGCCTG
AAACAATGTACAAGACCAAAAGGAAATTGAGGAAGGAGGTACTTTGAGGA
CTTTGAGGAGGTAGGAATGAGGAAAGGATTGTGAGTGCTGGCAGGACAAG
TAATCAGATGTGAGATGACGCCTGCAGCAGGCCCAGCAGGCTTCCGGGAG
GAGAGGGTAAGAGCAAGTTATTCACCAGATGTCATTGTCCTGGAAGCTTC
TAGCCTCCCTGCAATCTCGGCTAGACCTAGAGTGTTTTCACCCTCTGAGA
CTTAGTGCTGAATAAACTCACCTTTCCTTGTTCTTTCTGAACTCTGGCTG
GCTAGTTCAGCTCAGCTGTAATGGCTCAAAACT
AACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTTGGTGCCACAGAGCCTGGTGGCT
TCTTGGAATTTCCCTTAAAAACTAGTGACATTTTTGGAAGAACTTTTAAA
TACAGTTTAATAATTCCATGACCTGGTCATTTTAAACACCGAAAGGCGAG
CAAGAGATAATTAGAAGACCGATTAAATAGGAACATACCCATCTTTTTCA
TGGTTCCGAAAAGAACCTTATATAAAGAAGAACACTCCGAAGAATGGAGA
TGAGAGACCAAGAGAACTGAAAAGAGTATGGCTCCAAAGCAATAGGAAAG
CTAACAGGGCACATTAAATGGATTTCCCCCCCCCACCCTCCAGGGGTTAG
GGTAAAAAGAAGGAAACTGACCCCCCCGGAAAAATATAGAAAAGAGGCAC
TGGGCGGGGAAGGTGGTCTGGACCACAAGCTTGGCCTGGAGGCTCTAGCT
AACCTTCCCCAAAAATGACTGGATGCACTAGCGAAGTATACCCTAAGTCA
CATCCTCCTAAGGGCCTTTCCCTGAATGGCGCTTTACCCTTGAAAACCCC
CGAACTTACCGGTATACCTTTTCCCGTGCTCTATCCTCCCTCCAAGGTTC
TTTCCCTTCTTACCCCCCATTTTCCCCATAAAAAGTCCCTACTAACCCCC
CCCCTTCCGTCCCAATCCCCCCTCATTTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_j08.b1 MSMg01no064_j08.b1 CHROMAT_FILE:
MSMg01no064_j08.b1 PHD_FILE: MSMg01no064_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:38 2005
         (310 letters)



>mm_chr7_104683710_104684416
          Length = 707

 Score =  545 bits (282), Expect = e-159
 Identities = 299/306 (97%), Gaps = 3/306 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcaaaatgtaatgaacaagttctattggttaatcaggtggcaaacaaaattca 64
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattcatcaaaatgtaatgaacaagttctatttgttaatcaggtggcaaacaaaattca 264

                                                                       
Query: 65  tagatgtgcagaaatgattattaggatgcatttttccaagattagatagatgataagcta 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagatgggcagaaatgattattaggatgcatttttccaagattagatagatgataagcta 324

                                                                       
Query: 125 tcctcacatgagagatgcgatgaagactgcaagtgagccctgcgattccagccacccctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcctcacatgagagatgcgatgaagactgcaagtgagccctgcgattccagccacccctc 384

                                                                       
Query: 185 tctctttcctaccatccattcatgcattgtgtgctttctttagtgtacaccacactaagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 385 tctctttcctaccatccattcatgcattgtgtgctttctttagtgtacac---actaagt 441

                                                                       
Query: 245 gctggagctatggggaggcgatgaaggtcagtgcttcagcacacagttaggcacactgta 304
           ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gctggagctgtggggaggctatgaaggtcagtgcttcagcacacagttaggcacactgta 501

                 
Query: 305 ggtcaa 310
           ||||||
Sbjct: 502 ggtcaa 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 707
Length adjustment: 9
Effective length of query: 301
Effective length of database: 698
Effective search space:   210098
Effective search space used:   210098
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)