BAC Information

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BAC

Clone NameMSMg01-064O24
Chromosome7 (Build37)
Map Location 135,154,972 - 135,155,276
singlet/doubletsinglet
Overlap genenone
Upstream geneMvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72
Downstream geneLOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064O24.T7 (MSMg01no064_o24.b1)MSMg01-064O24.TJ (MSMg01no064_o24.g1)
ACCAG290266AG290267
length1,1991,189
length of high quality
(start - end)		419 (31 - 449)381 (70 - 450)
definitionCHROMAT_FILE: MSMg01no064_o24.b1 PHD_FILE: MSMg01no064_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:17 2005CHROMAT_FILE: MSMg01no064_o24.g1 PHD_FILE: MSMg01no064_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGAATCATTGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCA
ATCTCTATTAGCAAGAGTGTCACACAGTCGCTAGCAGAATCACAGGGCTC
TTCCCTGTCCTTTTCTGAAAGATGAAGCCACCATTTTAAATATTCACACA
CTGAACAACAATTCACCTCACAGCTCTGTGGCTTTTTAGTGTTCAGAGTT
GTGAAAACATTTCCAGGGTCAATTTTAGAATACTTTGTCACCTAAAAAAA
GAGATCTGACACCTGTTAGAAGTCACCCCATACTGTTGTTTCCCCTTGTG
CCCAAGCTTGCACAACCAGTCATCAACCTGCAGTCTCTACAGATTTACCT
ATTAGAGACACTTCACACAAATGTAGCCATGCAACATCTGATCCCTTGTA
ACTGGCTTCTTTTACTCAGCATAGGATTTTGAGACTCATCCACACAGCCT
GTTCATGGCCAACCAACATGCCATTTCATGGAGAAACGTTTAGTTTATCT
GCTTATAGGTAGACGGGCATACGGGTTGCTTCTACATTTCATCTATTAAT
CATGAATAATGCTTCAAAAGGCATTCTATGTGGTTTGTATGAGGACATGT
TTTCAGTTCTCTTGTGCTAGAATTGTCTGATCATACGGCAACTCTATAAA
TAATCTTCTGAGAAATTAACACATTGTTTCAAAATAGCCACATCATTTCC
CACTCTCACTAGCAGTGTCTGAGCCTGCAGCTTGTCCTGGTGACTGGTGA
CCCTGCTGATCCCAGCTGTGCTGATGAGGGCGAGGTTACACCTCACTGTG
GTGATGATGCTAAGCACTCGGACTTTGNTGTGTTTTCTGGCCTTTGTTGA
AAGTCTCTGAAGAAAGGTCAGCTGAAATGCCTGCGATTTGACTGCTTTGA
AATTTGCCCAGGAAAAGCACCCTTTCTTTCTAAGGAAGCACTGCCCCCTC
CGGGGGAAAGGTTTTCTGTCCCATTACCCCGGAAGAATTTTTCCATTGTT
GTAATGTTAATTAAAATTTTAATTTATTTTTATTCCTCCTATTACACCCC
AAATATTTTTTCTCTTCTCTCTAATACTTTTTTTTCCACTTAACAACTTC
TTTCTCTTTTTTCTTCGCTCTACATTTTATTAACCCTAAACTCCTCCCTC
TCATATTAATCTCAATCCTCTACCTTTTTTTAACCTACTATCTCTCCCT

NNCCGATGAAGGAGCCTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTATGTGCCCCAAGTTAGCTTCAAATTCCC
GATTCCCCTCTTGCGCCTCTGGAGTGCCCCGGTTACAGGTGTATGCCGCC
ATGCTCAGCAAAGTCGGTTGGTTGTGACAAGTTTCTAAGTGACCCAGAAG
CTGCCGGTCACCTTGGCATCACACTGAGTACACCCTGACTGTAGACTATC
AGCGTAGACAAGAGGCATTAAGTCTGATTATGTTGCCTGGCTCAACTAAC
ACTTAAAATCTGCCTGACAGAGAGAGGAGAGGGAATAGTAGAACTCTTAG
TCTCTCCCATGGCTTCTAGAATGTACACCCTGACTGTAGACTATCAGCAT
AGACAAGAGGCATTAAGTCTGATTATGTTGCCTGGCTCAACTAACACTTA
TTTTCTGCCCGACCCAGAGAGGAGAGGGAATAGTAGAACTCTTAGTCTCT
CCCATGGCTTCTAGAATGTGGTTTTGTTTGGACATTGAAGAAATCCTCCA
TGATTTCTTCCAAGAAATCCTCCATGGAATCCTCCAAGAGAAAGAGCTTC
ACACTGTCTTTCTTTGGGCCCTGCTGCTGCCAGCAAATAAGATTTTCTGT
GGGGCTTCTAAACTGGCCTCTTCCTGTCTTCCTTGGAACTTTGCTCTGTA
ACCCAGGCTGGTCTTGAACTCAGAAATCTGCCTGTCTCTGTGTCCAGAGT
GCTGGAATTAAAGGAGTGTGCCACCACAACTGGGCTACTTTTTTAGACTG
AACAAAAATTATTGTTTTTAATTGTGTGTGTGTGTGTACCCCGTGCGTGC
GCACTCCCGTGCTTTTTGCATAGGATAGTAGCTTCTTGTTGAAGGTCTTT
TTTTCTCTTCTCCCTTTTATTTTCTTTTAACTTTCTTTTTTTTCTTCTAT
TTCATTCCTGAATTCTTTTCCTCTTTGTTTTATTTTATTCTTTCTTCTTT
TTTTTTTTTCATTCTTTTTCCTTCTATACACTTTTCTTATTTATACTACT
CTTTCCTTTTTTTTTACATTTTTTTTTTTCCTTTTCTTCTTTCTCTCTCT
CTTATTTTTCTTTCTTCCTTCTTTTTTCTCTTTTTTCTTCTTTTATCTCC
CTATATATCTTTTCAACTTTCTTCTTTTATTATTCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_o24.g1 MSMg01no064_o24.g1 CHROMAT_FILE:
MSMg01no064_o24.g1 PHD_FILE: MSMg01no064_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:17 2005
         (381 letters)



>mm_chr7_135154772_135155552
          Length = 781

 Score =  513 bits (265), Expect = e-149
 Identities = 295/309 (95%), Gaps = 8/309 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgtgccccaagttagcttcaaattcccgattcccctcttgcgcctctggagtgccc 60
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   
Sbjct: 201 actatgtgccccaagttagcttcaaattcccgattcccctcttccgcctctggagtg--- 257

                                                                       
Query: 61  c----ggttacaggtgtatgccgccatgctcagcaaagtcggttggttgtgacaagtttc 116
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 -ttgtggttacaggtgtatgccgccatgctcagcaaagtcggttggttgtgacaagtttc 316

                                                                       
Query: 117 taagtgacccagaagctgccggtcaccttggcatcacactgagtacaccctgactgtaga 176
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 317 taagtgacccagaagctgccggtcaccttggcatcacactaagtacaccctgactgtaga 376

                                                                       
Query: 177 ctatcagcgtagacaagaggcattaagtctgattatgttgcctggctcaactaacactta 236
           ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 377 ctatcagtgtagacaagaggcattaagtctgattatattgcctggctcaactaacactta 436

                                                                       
Query: 237 aaatctgcctgacagagagaggagagggaatagtagaactcttagtctctcccatggctt 296
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 437 aaatctgcctgaccgagagaggagagggaatagtagaactcttagtctctcccatggcct 496

                    
Query: 297 ctagaatgt 305
           |||||||||
Sbjct: 497 ctagaatgt 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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