BAC Information

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BAC

Clone NameMSMg01-065K23
Chromosome7 (Build37)
Map Location 59,053,526 - 59,053,784
singlet/doubletsinglet
Overlap genenone
Upstream geneNell1, EG668766, EG668767, EG668768, EG638046, EG668770, EG668774, LOC668776, LOC434186, LOC546971, LOC668779, Tmem16e, Slc17a6, EG620599, LOC654473
Downstream geneLOC100040608, Gas2, 1700015G11Rik, EG668783, EG620782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065K23.T7 (MSMg01no065_k23.b1)MSMg01-065K23.TJ (MSMg01no065_k23.g1)
ACCAG290836AG290837
length675671
length of high quality
(start - end)
137 (95 - 231)246 (72 - 317)
definitionCHROMAT_FILE: MSMg01no065_k23.b1 PHD_FILE: MSMg01no065_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:16 2005CHROMAT_FILE: MSMg01no065_k23.g1 PHD_FILE: MSMg01no065_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCTATXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGATCCGCGGAA
TTCTTTGGATTGCCCTGTACCCCATTTTTAATAGGGTTATTTTGGTTCTG
TATCGTCTAACTTCTTGAATTCTCTGTATATATTGGATATTAGCTCTCTG
TTGGATGTAGGATTGGTAAAGATCTTTTCCCAATCTGCTGGTTGCTGTTT
TGTCCTAGTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTATGA
GGTCCCATTTATCAATTCTTGTTCTTAAATCATAATCTATTGTTGTTCTG
TTCAGAAAAATTTCCCCTGTACTCTTGTGTTTGAGGCTCTTCCCCACTTT
CCTTTTTATTAGCTTCAGTTTATCTTGTTTTATGTTGAGATCCTTAATCT
ACTTGTATTTGAGCTTTGCACCTTTTGAGAATGATTTGATTTCGTATTCT
TTTACATGCTATGTGACTGTTGTACCTTCACCTATTTTTGATTATGCTGT
CTTTTTTTCACTGTATATGTTTAGCTCCTTTGTCATAGACCCTTTGACAA
TAATTGCATCTTTTCTTTTACTTGTAGTTCAAATCTACTCCATTGAATTA
CTTATCTTGTCTAGTCTCTACTTCATCCTCCTTCTATCTCTTTTGCTCTA
TGTCATTTTATGTGGTTTTTTTTGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTCTAAGTGTCTTCTGAACATATAGTTT
CATGCACATGAGGCTCCATAGGATATTTTCAAACCCATGGATCTACAGAC
CACTCTAAAACAACTTAGTGGATCACAAAAAGTGCTGAGTGTGGACATGT
AAGAGAGGAAAGTAGGGAGTTGTCATGTGCAGGAAGGGGAGGAAAGTGAG
GGGTGAAAATAACAAAGTGTGTGTGTGTGTGTGTGTAAGAACAAATTTAA
TTCATCTTTTAAAAAAAACTTTCTGGAGTTCTGATAGCATAGGTTTTTGG
TTAGGATCTGCCCCAAATATCTCCCATCCCACTAAACCCAAGTGAAGCTC
ACATGCCATAAAGACCACCATGATTCTGTATTGCATACTTGGCTGATCAG
TTGGTCACCATTGTTCCAGTCGGATGCAAAGACAAGCCTGTGGCTTAGAT
CCACATTTTTCCTTAGAAATATATTTAGCACCTTGTGGGAAGGCTAGGCT
CCATGGCCCGAGCTGTTAAATATAAGCAGGTATTGTCTGAATTGATTGTT
TCAATAATTCTTCCAGACTTTGTTAAAGTCTCATTTCAACCCCCCTTTCT
GTTAATTGTGTGCTTACAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_k23.g1 MSMg01no065_k23.g1 CHROMAT_FILE:
MSMg01no065_k23.g1 PHD_FILE: MSMg01no065_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:16 2005
         (246 letters)



>mm_chr7_59053389_59054035
          Length = 647

 Score =  412 bits (213), Expect = e-119
 Identities = 242/259 (93%), Gaps = 14/259 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctaagtgtcttctgaa-catatagtttcatgcacatgaggctccataggatattttc 59
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttctaagtgtcttctgaagaatatagtttcatgcacatgaggctccataggatattttc 337

                                                                       
Query: 60  aaacccatggatctacagaccactctaaaacaacttagtggatcacaaaaagtgctgagt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaacccatggatctacagaccactctaaaacaacttagtggatcacaaaaagtgctgagt 277

                                                                       
Query: 120 gtggacatgtaagagaggaaagtagggagttgtcatgtgcaggaaggggaggaaagtgag 179
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 276 gtggacatgtaagagaggaaagtagggagttgtcatgggcaggaaggggaggaaagtgag 217

                                                                       
Query: 180 gggtgaaaataacaaa------------gtgtgtgtgtgtgtgtgtgtaagaacaaattt 227
           ||||||||||||||||            ||||||||||||||||||||||||||||||||
Sbjct: 216 gggtgaaaataacaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagaacaaattt 157

                              
Query: 228 aattca-tcttttaaaaaa 245
           |||||| | ||||||||||
Sbjct: 156 aattcatttttttaaaaaa 138


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 647
Length adjustment: 9
Effective length of query: 237
Effective length of database: 638
Effective search space:   151206
Effective search space used:   151206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)