BAC Information

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BAC

Clone NameMSMg01-066H21
Chromosome7 (Build37)
Map Location 66,595,686 - 66,596,221
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a
Downstream geneLOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1, LOC664788, Snrpn, Snurf, EG664849
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066H21.T7 (MSMg01no066_h21.b1)MSMg01-066H21.TJ (MSMg01no066_h21.g1)
ACCAG291452AG291453
length728760
length of high quality
(start - end)
610 (44 - 653)252 (63 - 314)
definitionCHROMAT_FILE: MSMg01no066_h21.b1 PHD_FILE: MSMg01no066_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:18 2005CHROMAT_FILE: MSMg01no066_h21.g1 PHD_FILE: MSMg01no066_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:18 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAATACGCGGAATTC
CAGGGGTCCTTTGTCGCTTTTAATTAGGTTTCTCTATGGTATGCATGAAA
ACTTGTGTGTGCTGGGCCTGGTTTTAGTAGAAGAGGCAGCCACAAGAGAG
TTTCTGCACAATGGCATTCTGAGTGTTTAATAACCATACTTGGAGGCTAA
TGTTCAGAGGCAGTGAATGGGAGAATATTTTTTCTTGGCCCTCCAAGGTC
ATTAAGTCCCAAAGGACTGTGTGTTATCTCTAGAAATGTTCACACACTGT
ATAATGTCACCCGTACTCTTGTTCTAGGATGCTATGGTGACCCCACTAAA
TGAATTCTAACCCTTTGCATGATACAGATGCTTTGCATCTTTTAATTTTG
ATTGTGGCCTCTTAGAGAGATTCTTTTCTGGGACGTTTTAAGCAATACTC
TTTTTACACTATGCTTCTTCACACCTTGAAGCACTTTAGAAAGATTTATA
CCCAAAAACTTTTAAAAGCAGTTCAGGTGACCCCTAAAGGGAGGACTAAA
GGGCCATGAGCTATTCATCCCTCTTCTTGACACCCTAGGGTGCAGAACTA
AAGAGCTGGACTGAAGGCTTCTTTGTATAATCAGTAATCAGAAAACTTTT
TTTATAAAAATTAGGTCAGATAACATCTTTTGGGGCCAATTTGATTCTTT
GGCTGTTTGTAGTACTCCAAAACTAAAT
TACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGCCATTCAAGTTGGGGCGATTCTCTGTTCCATCTTTG
TCTCCGCATTTCTTTTAGACAGGACCCATTTGGGGTAGGAAATTTTGTGA
GTGGGTTGGTGTCCCTGTCCCTCCACTAGGAGTCCTGCTGAACAGTATTG
CATTATGTAAATGAACCACATTTTCTGTATCCATTCTTTGGTTGAGGGAC
AACTGAGTTGTTCTTAGTTCTGCATATTATGAATGCTATGAACATAGTAG
AGCATGTATCCTTGTAATGTGTTGTATCTTCTTTTGCAAATATGACCAGA
ATTGGTATAACTGTGACTTTACTCCCAACTATTACCAGTTTTCCTATATA
TCACCTGATTGATTCCCCACGCGATTGTTCAAGTTTGCAAATCCATCTTC
TATGCCTCTCTGTTCTTTTCACCTTATCATCATTACAACCTTTATTTGTC
ACTTATCACTATTATACCTTACATATTCCGCATTATTCTTTATCTCCCCA
TTTCCCCCCACTAATTTCCATCCTCTCTCTATTTCACCATTCATCTTCTC
TTTACACCTTCTCTGCTTATAAATTCCTCCATCTTTTATTTCACCATTTC
ACTATTTCTTCATTTTCTTATATTTCCATCTTCCTCTCCTCTATCCCTAT
ATATTTTACTCTCTTTTTCTTACTCCTTCAACTTCATCTATTCTCCACTT
TCTACCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_h21.b1 MSMg01no066_h21.b1 CHROMAT_FILE:
MSMg01no066_h21.b1 PHD_FILE: MSMg01no066_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:18 2005
         (610 letters)



>mm_chr7_66595686_66596694
          Length = 1009

 Score = 1023 bits (529), Expect = 0.0
 Identities = 535/537 (99%), Gaps = 1/537 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaattccaggggtcctttgtcgcttttaattaggtttctctatggtatgcatgaaaact 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ggaattccaggggtcctttgt-gcttttaattaggtttctctatggtatgcatgaaaact 478

                                                                       
Query: 61  tgtgtgtgctgggcctggttttagtagaagaggcagccacaagagagtttctgcacaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgtgtgtgctgggcctggttttagtagaagaggcagccacaagagagtttctgcacaatg 418

                                                                       
Query: 121 gcattctgagtgtttaataaccatacttggaggctaatgttcagaggcagtgaatgggag 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gcgttctgagtgtttaataaccatacttggaggctaatgttcagaggcagtgaatgggag 358

                                                                       
Query: 181 aatattttttcttggccctccaaggtcattaagtcccaaaggactgtgtgttatctctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aatattttttcttggccctccaaggtcattaagtcccaaaggactgtgtgttatctctag 298

                                                                       
Query: 241 aaatgttcacacactgtataatgtcacccgtactcttgttctaggatgctatggtgaccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aaatgttcacacactgtataatgtcacccgtactcttgttctaggatgctatggtgaccc 238

                                                                       
Query: 301 cactaaatgaattctaaccctttgcatgatacagatgctttgcatcttttaattttgatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 cactaaatgaattctaaccctttgcatgatacagatgctttgcatcttttaattttgatt 178

                                                                       
Query: 361 gtggcctcttagagagattcttttctgggacgttttaagcaatactctttttacactatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gtggcctcttagagagattcttttctgggacgttttaagcaatactctttttacactatg 118

                                                                       
Query: 421 cttcttcacaccttgaagcactttagaaagatttatacccaaaaacttttaaaagcagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 cttcttcacaccttgaagcactttagaaagatttatacccaaaaacttttaaaagcagtt 58

                                                                    
Query: 481 caggtgacccctaaagggaggactaaagggccatgagctattcatccctcttcttga 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  caggtgacccctaaagggaggactaaagggccatgagctattcatccctcttcttga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1009
Length adjustment: 10
Effective length of query: 600
Effective length of database: 999
Effective search space:   599400
Effective search space used:   599400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)