BAC Information

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BAC

Clone NameMSMg01-066N14
Chromosome7 (Build37)
Map Location 104,939,044 - 104,939,415
singlet/doubletsinglet
Overlap genenone
Upstream geneOdz4, Nars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594
Downstream genePak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066N14.T7 (MSMg01no066_n14.b1)MSMg01-066N14.TJ (MSMg01no066_n14.g1)
ACCAG291725AG291726
length678823
length of high quality
(start - end)
375 (56 - 430)219 (107 - 325)
definitionCHROMAT_FILE: MSMg01no066_n14.b1 PHD_FILE: MSMg01no066_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:47 2005CHROMAT_FILE: MSMg01no066_n14.g1 PHD_FILE: MSMg01no066_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCCATAGGCAAATAAAAGGTAGGAAGCAGCACTCCAGGCAAAGTA
GCAATACAGAAAAAAAGAGAAGAGAAGAGGAGGCGGAGGACAGAACCCAG
AAAGTTTAAGGATGCAAAAGTAGGCAATGGTCAGCTCTCCAGGAGTTTCT
TATTTCACACTAAAAAGTTTGAAGGTAATCCTTCAACTGTGAAAAGGGGG
GTGGGAGGGGAGGAAGCACTGATAGACCAGGTTTTGTTTTACAAAGACCC
CTCAAGGTACACAGCTTCCTGCAAACCTAGCAAAAGGCCTCAAAACAAGT
ACTCAGAAAATATACATGGAATTGAACTGGATAAGCTTTTTATCAAGTAA
ACTCTTACAGATGAAGGGCCACTTTCCCTACGGACTTGCTGTGGCCAGGA
CTTGTATGATAGGTCCAGCAACCTTAATTACTGTGCACCATTCTCTGTAC
AACTGGAGTCCCCCAGAGGACCTTCATTGTTTACAAGTCTACCTCACCCA
CTAATCTTTGAGCTCTTGGTCTTGTGAGCAAAGACTGGCTGCATTGATGT
ACTTGAAATCATCACAGACTTTACTAGGCATTTTGAAATTCTGTATCACT
TCTCATTGTTTTATTCACATTTGCACAA
CCCCCCCCCCCCCCCCCCCCCCTACNNNCACCNCTNCCCTNNCNTCTTAA
ATNTCTCTCTAAAATTGCGGCGCTATACGACTCCTATATTCAGAGAACCG
CGGAATCTATAAAGGTAGCCGCTTAAAAAAATGTTGCCTATCTCTGGTGA
CTGGAAATACATGGGCTTTGTCCTACAAACATCTCTAAGTTCAGTTCCAC
AAAGACATGATGCCCTCTTCTTGCCTCCACAGGCACATAGAACACATACA
CACAGGCAAAACACCACACACATAAAAGAAATACAGATTTATGGTTTGTT
GCTGCTTTGGTTTGCTTTTGTTTGTTTTTGTTTTATTTCTTTCCCTCCCC
TCCATTTTCTTATTTTACTTTTCTTTTTTTTTTTCCCCCCCCCCCCTTTT
CTTCCCTTCCAATTTTTTTCCTTCTTCTTCCTCTTTCCCTTTTTCTTTTT
TTCTTCCTTCTCCCCTTCCTCCCCTTTCCACTTTTTCCCTTTTCTATTAC
ACTCCTCTATTATTTATTATTTTATAACAAATTTTTACTCACAAAACTTT
CATACTTATTTTCCTTATTTTTTTTCCACTCTACCTCTTTCTTTTTATCC
TTCTTCTTTCTAATATCCTCCTTTTTTACCCCCTTTCTCTTACTCCCTCA
TATAATTTTTTATTTTATACATCTCAAACACAAATCCAACATCATTAAAT
AATCATCACAGAAACAAAAATAGTATACATAATTTTAAAATATATCTCAC
TTATTTACAACTTATCACTTACATTATTTTCTCATTTTTTTCATTTATTC
ATCAAATTTCTATTTATTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_n14.b1 MSMg01no066_n14.b1 CHROMAT_FILE:
MSMg01no066_n14.b1 PHD_FILE: MSMg01no066_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:47 2005
         (375 letters)



>mm_chr7_104938844_104939615
          Length = 772

 Score =  648 bits (335), Expect = 0.0
 Identities = 364/375 (97%), Gaps = 3/375 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccataggcaaataaaaggtaggaagcagcactccaggcaaagtagcaatacagaaaaaa 60
           |||| |||||||||| ||||||||||||||||||||||||||| |||||| | |   |||
Sbjct: 572 tccacaggcaaataacaggtaggaagcagcactccaggcaaagcagcaattcgg---aaa 516

                                                                       
Query: 61  agagaagagaagaggaggcggaggacagaacccagaaagtttaaggatgcaaaagtaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agagaagagaagaggaggcggaggacagaacccagaaagtttaaggatgcaaaagtaggc 456

                                                                       
Query: 121 aatggtcagctctccaggagtttcttatttcacactaaaaagtttgaaggtaatccttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aatggtcagctctccaggagtttcttatttcacactaaaaagtttgaaggtaatccttca 396

                                                                       
Query: 181 actgtgaaaaggggggtgggaggggaggaagcactgatagaccaggttttgttttacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 actgtgaaaaggggggtgggaggggaggaagcactgatagaccaggttttgttttacaaa 336

                                                                       
Query: 241 gacccctcaaggtacacagcttcctgcaaacctagcaaaaggcctcaaaacaagtactca 300
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 335 gacccctcaaggtacacagcttcctgcaaacctagcaaaagacctcaaaacaggtactca 276

                                                                       
Query: 301 gaaaatatacatggaattgaactggataagctttttatcaagtaaactcttacagatgaa 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gaaaatatacatggagttgaactggataagctttttatcaagtaaactcttacagatgaa 216

                          
Query: 361 gggccactttcccta 375
           |||||||||||||||
Sbjct: 215 gggccactttcccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 772
Length adjustment: 9
Effective length of query: 366
Effective length of database: 763
Effective search space:   279258
Effective search space used:   279258
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)