BAC Information

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BAC

Clone NameMSMg01-067O01
Chromosome7 (Build37)
Map Location 120,318,915 - 120,319,198
singlet/doubletsinglet
Overlap genenone
Upstream geneMical2, Micalcl, Parva, LOC627808, Tead1, 4632411J06Rik, LOC434227
Downstream geneArntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2, EG434228, Spon1, Rras2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067O01.T7 (MSMg01no067_o01.b1)MSMg01-067O01.TJ (MSMg01no067_o01.g1)
ACCAG292507AG292508
length812711
length of high quality
(start - end)
---285 (71 - 355)
definitionCHROMAT_FILE: MSMg01no067_o01.b1 PHD_FILE: MSMg01no067_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:07 2005CHROMAT_FILE: MSMg01no067_o01.g1 PHD_FILE: MSMg01no067_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTCCCAGTACTAGGACATTGAGGTGGGAGTGGGTGGTTGGAGG
AGTGCTGGGCTGTTAGTGTACCCCCAGAGGGACGAGTTATTNATATCAGG
CTAATCTTATAATAACGTCTCAATCCCCCGTATTACTTTCTTGTCAATTA
TACTCTCCATTTTACAATTTAATAGGCTCTTCATCTTAAACAGCTAGTCA
GTTATACCTACCCCATGTTAATTAGTATTAGACACGCCGCTCTTTCATTT
TTTCGTTACTATTTTCTCGTGTAATAACATTTTAATACCATTACGCCCCC
TATTTATATTTCCCCTTTCTCTTATTTTTTATGTTACCCGCGCCTCCCCC
CCTTTTAATTAACGGATAACGATGTAAAAACAAAAAATTTATCTAAGATA
ATAAAAACAATAACTAAACACATTCTGCTGTAGTCGTTACATCATTTCCC
GGACATATATTACTTATCTTTTTCGATCTTCATATTATAAATTCTTATAT
ATATGGACACCTAGCTATAACACCGCTAATTCATTATTACTCCTCCTAGC
TAGAAATTTCTCTAATTGATCTCACACCAGGATAACAGGAATACGATGTT
GTAATAATACGACCTAGTTATTATTTTTACATATATATTCTTATTATATA
TCGTATAATATATATAACAATATAACTCTCGATTCACACACACTTTACAT
TACGACATTCTTGTAATAANACATTTAACTATTTTATTCGCTTCATACCC
GCCGCTTAATAC
ATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTACTGACACGCCCTGTGTACTGCTATCC
CTCCAGCCTTTATCACTGCCACGGCAGATCCATACCCCCAACACACCCAT
GTCTGTGAAGACACACAGTGTTCCTTGTGATGAAACCAAGCAATTGTTCG
AAGATGGCATCCTTTCTGAGTGGGAGCCACCATCAGGTGAGCTTGGAGTC
TCTGCCGAGCAATCTGTGAGGACGTGGGGACTTTTCCGGCTTAACAGAAG
GCAACTACTTTGATTTTTCCACTATGACTAAGTGGGATCTATGCACTGCA
TGGGCTTGTTGTATTTTTGACACCCCCCCCCACTGTCCCTGCTCCTCCTA
CTCCCCTATCTATGAGTAGCCTGCTGAGAAAAAAACACGACAAGACTGGG
AAAGTGATATTGTTTTCCCGGGAAGGTGGTGGTTCTTCATAGGCTCTGGG
GTTTTGGAACAGCTGGCAAGCGTGGCATGATCATGATCTCAACTTAACTG
GGACCCTCCCTTGACCTTGTTGATCTTGCTCTTTTGTCCCTGCATATTGG
CGTTTCTCTCTGAACCCTGAATGAATTGGCCCTGAAGATAATTCCTGCGA
CTACGAATCCCAGTTTTAATTAACCGCTATCTCATGTATAAGTACTTTCT
TAATTCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_o01.g1 MSMg01no067_o01.g1 CHROMAT_FILE:
MSMg01no067_o01.g1 PHD_FILE: MSMg01no067_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:07 2005
         (285 letters)



>mm_chr7_120318715_120319398
          Length = 684

 Score =  513 bits (265), Expect = e-150
 Identities = 280/285 (98%), Gaps = 1/285 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attactgacacgccctgtgtactgctatccctccagcctttatcactgccacggcagatc 60
           |||||||||| | |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 201 attactgacatgtcctgtgtactgctatccctccagcctttatcactgcta-ggcagatc 259

                                                                       
Query: 61  catacccccaacacacccatgtctgtgaagacacacagtgttccttgtgatgaaaccaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 catacccccaacacacccatgtctgtgaagacacacagtgttccttgtgatgaaaccaag 319

                                                                       
Query: 121 caattgttcgaagatggcatcctttctgagtgggagccaccatcaggtgagcttggagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caattgttcgaagatggcatcctttctgagtgggagccaccatcaggtgagcttggagtc 379

                                                                       
Query: 181 tctgccgagcaatctgtgaggacgtggggacttttccggcttaacagaaggcaactactt 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 380 tctgccgagcaatctgtgaggacgtggggacttttccggcttagcagaaggcaactactt 439

                                                        
Query: 241 tgatttttccactatgactaagtgggatctatgcactgcatgggc 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgatttttccactatgactaagtgggatctatgcactgcatgggc 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space:   186300
Effective search space used:   186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)