BAC Information

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BAC

Clone NameMSMg01-068I18
Chromosome7 (Build37)
Map Location 78,287,316 - 78,287,895
singlet/doubletsinglet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535, Mctp2, LOC100042873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068I18.T7 (MSMg01no068_i18.b1)MSMg01-068I18.TJ (MSMg01no068_i18.g1)
ACCAG293016AG293017
length1,701716
length of high quality
(start - end)
---579 (77 - 655)
definitionCHROMAT_FILE: MSMg01no068_i18.b1 PHD_FILE: MSMg01no068_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:01 2005CHROMAT_FILE: MSMg01no068_i18.g1 PHD_FILE: MSMg01no068_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGTTCTCTCCCTCCTAGCCTGCTTTTGTTTCTCCTTCGCTCGTTTTCGC
TGGTGGNNTTTGACGTNCGCTTTCTCCACCCCAACCCTTTCCTTCACTCC
TCACCCACCTTTCATAATACTATTCTATCTGTCTCTCGCTTATCACGCAC
ATCAATATCTTATTATCTATATACCAACCCAACGCAATACAACCTCGCTA
TATATTTCACCGCCACACCGAGTAATCACACCCAGCAAAGAGATTGTAGA
GAGGACCAGAGGTGCGCACGTCCTTACTGTATCCCAGCTTATAATGTACA
CTACACCAGTTCTTTTGCACAATGATGTGGTGTGGCCCACTCGCTTAGCA
ATATCTTTCTCTTATGAAACATCAGCTCTCGCTCTCATCGAGGTGGTACT
CGGAGCCGGGATATGTGTCGCGGAGTAAGGATGATGAGAGTTTGAAGCTG
GCATATAGGGATATCGCGTGGTAACTAGAGGCGACAAATGCTTATCAGGA
TATCCAACGTCGAATTTTACGCGCGATGTGGCGTGCACCTGAGATGGCCA
ACTTGTCTAGCGTATTCGTGCGTATGATATGTAGTGTATTGTACACGCGA
ATGTATATTGTTAGACCTGCGCGGTGAGCGGTGCGTTATAGGTAAAACAG
TAGGCGCATATTGTGGCGGTNCACCCTCTCTCGTATTCGCATTTGGTCTC
CACTGTGTTTAGTCTGAAGGCTGATAGTGTAGGTTCGGAGTATCGGAGCG
CGGGCGTATGATGGTTCACGCATATTAAATATAGAGACGAGTAGTATGTG
GGTACTATCGTGCGACGCGACGCGGTCTGAGATTATTTATGGTGAGGAGT
GNCACATACAATAATGCCGCGTGTATCTCAGCACTATGGCGCTACGCGGA
CATCACTATCATCCGCGGATATAGCCTTCCGTTCTTATCCATCACTGTAT
CCGCCCGCGCTCGCTCGCTTCATGAATGCGTAGGCGGACGAGACTCTAGT
TGGGTGTATATTAATTGCCACTGCGCGATCAACGGTGGCGCATGTTCATC
CGAGCGCGATTCGCGCCGTGCATGTTACGGTAGCCGATGAGTTATTCNCG
TGGGGCATTTCAACCCGCCGTGGTGAGTCGCTTTTAAGGCCGCGACTCGT
CGCGCGCGCACCGACGCGTGTTANTGGATCGGACACTAACTAGTATCCTT
AACTTCGTAAAGAACAGCGTGCACTCGCGCCGCGGATAATGTCTTGGCGG
TACACAATAGTGCTGGAGCAGTCAGCANCGCGACTGTTGCGATACTCCGC
ATCCGCGCGCGGTGCGGCGGCGACTCTGTTACAGTCGGTGCGTTGACGCC
ACTCTAATGTGATGACTATCTTCTTTATCACTTATAGCGGNGCGTCTGTA
TTTCTCTGTGCCCGACACGCGTCATACCAATAGTTCGTCATCTTGCTACT
ACTCATATCTCTCGTACTCTACTACCGCNTACTCAGTTTACTCAACATCA
TCTCACGTGATCATGAACTCTCGCGCGCTNATATGATCACTGTNTGCGGG
TCAATCATCCTATCCGACGGCAGACGAACAGATATGTAATATATGCATGT
CGGATATGACCAATAGGAGGCGCCGACTANATTATATATATAATTCANAT
AGCGACCATCATCTCTATCACACCCTAATCTCCGTGTTAAATAACGAACG
T
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTACACTCACATAGCACAGTGGA
GTGTGGCAGACAGAGAGGCACACCCTCTCCATCTCAGTCCATGCTCTTAA
GGATCATTAAGAGAGTTTCCATTTGCCCCATACTGTTTTTAATCCACTGT
GATGTCCATTGCCCTTTTTCTCATGGTGATCTAATCAAACCGTTTATACT
AGTTCCGAGTTAAGCTCACATTTGCCAATAAGTAAAAATTATCTAACTAT
GTCTTCAGTCACTTATTTTGTCAATTTTGAATGACTTTTGAACTAGAGAT
AAAAAAAAGTAGCTAACATGGATACTCTAAGTCTCAATGAAACTCTTCTA
TTTGAAAAACCTTCATAATACTTTTTATTTTGTTGTTTTTATATACTAGT
ACAACATTTATTTTCCCTTGGAAAAAATGGTATATATTTATGTGTATGTA
TGTTTTGCCTGTATGTATATCTTTCTACTAAGTATGTGCAGTGCCCACAA
AGCCCAGAAAAGAGTGTTGTATCTCTTCAGATTAGACTAACAGACAGTTG
TGGGCTGCTCTATGGATGCCAAGAATTGAACCTGGGTCTTCTGGAATAGC
AGCCAGTGCTCTTAAAGGTTCTGCTGTCCCTTTAGCTCCTAATGCTACAT
TTAATTTTAATTACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_i18.g1 MSMg01no068_i18.g1 CHROMAT_FILE:
MSMg01no068_i18.g1 PHD_FILE: MSMg01no068_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:01 2005
         (579 letters)



>mm_chr7_78287285_78288264
          Length = 980

 Score = 1098 bits (568), Expect = 0.0
 Identities = 577/580 (99%), Gaps = 1/580 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtacactcacatagcacagtggagtgtggcagacagagaggcacaccctctccatctca 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 611 agtacactcacatagcacagtggagtgtggcagacggagaggcacaccctctccatctca 552

                                                                       
Query: 61  gtccatgctcttaaggatcattaagagagtttccatttgccccatactgtttttaatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gtccatgctcttaaggatcattaagagagtttccatttgccccatactgtttttaatcca 492

                                                                       
Query: 121 ctgtgatgtccattgccctttttctcatggtgatctaatcaaaccgtttatactagttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctgtgatgtccattgccctttttctcatggtgatctaatcaaaccgtttatactagttcc 432

                                                                       
Query: 181 gagttaagctcacatttgccaataagtaaaaattatctaactatgtcttcagtcacttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gagttaagctcacatttgccaataagtaaaaattatctaactatgtcttcagtcacttat 372

                                                                       
Query: 241 tttgtcaattttgaatgacttttgaactagagataaaaaaaagtagctaacatggatact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tttgtcaattttgaatgacttttgaactagagataaaaaaaagtagctaacatggatact 312

                                                                       
Query: 301 ctaagtctcaatgaaactcttctatttgaaaaaccttcataatactttttattttgttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctaagtctcaatgaaactcttctatttgaaaaaccttcataatactttttattttgttgt 252

                                                                       
Query: 361 ttttatatactagtacaacatttattttcccttggaaaaaa-tggtatatatttatgtgt 419
           |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 251 ttttatatactagtacaacatttattttcctttggaaaaaaatggtatatatttatgtgt 192

                                                                       
Query: 420 atgtatgttttgcctgtatgtatatctttctactaagtatgtgcagtgcccacaaagccc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 atgtatgttttgcctgtatgtatatctttctactaagtatgtgcagtgcccacaaagccc 132

                                                                       
Query: 480 agaaaagagtgttgtatctcttcagattagactaacagacagttgtgggctgctctatgg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 agaaaagagtgttgtatctcttcagattagactaacagacagttgtgggctgctctatgg 72

                                                   
Query: 540 atgccaagaattgaacctgggtcttctggaatagcagcca 579
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  atgccaagaattgaacctgggtcttctggaatagcagcca 32


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 980
Length adjustment: 10
Effective length of query: 569
Effective length of database: 970
Effective search space:   551930
Effective search space used:   551930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)