BAC Information

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BAC

Clone NameMSMg01-069M10
Chromosome7 (Build37)
Map Location 104,365,471 - 104,444,257
singlet/doubletdoublet
Overlap geneGab2, LOC100040457
Upstream geneOdz4, LOC670727, LOC666858, Nars2
Downstream geneUsp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069M10.T7 (MSMg01no069_m10.b1)MSMg01-069M10.TJ (MSMg01no069_m10.g1)
ACCAG293954AG293955
length692675
length of high quality
(start - end)
302 (72 - 373)177 (107 - 283)
definitionCHROMAT_FILE: MSMg01no069_m10.b1 PHD_FILE: MSMg01no069_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:37 2005CHROMAT_FILE: MSMg01no069_m10.g1 PHD_FILE: MSMg01no069_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,443,956 - 104,444,257)(104,365,471 - 104,365,647)
sequence
AATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGCCTCCCCAGTGCTGGGATAAAAGGCATGTGCCACCACTCC
TGGCTTAAGTATATTTCTCATTCCAGGGAAAATAATGTGTAAATATTTGT
AAAAAGATTAACTACCACTTAGCATTTTAATGACCATCTGTCACTAGCAA
TCTTAAGTCACTTGGACCATCTTCCAATCCCAATCCCAGATGAGCCCGTT
CTATGAGTATGTGTCACAGACGTTAAAACATGACATGACCCAGTGTATCT
TGTTTTATGTTGAAGTCTTTGATCTCCTTGGACTTGAGCTTTGTGCAAAC
TGACAAATATGGATCTATTTTCATCTTTCTACATACCGACTGCCAGTTAG
ACCATTACCATTTATTACACATGCTTTCTTTTTTCCATTGTACATTTTTG
GCTTCTTTGCCAAAGATCTAGTGTCCTTAAGTGTGTGGTCTTATTTCTAG
GTCTCCAATTCTATTCCACTGATCGATCTGCCTGCCTTTTTATCACTATC
CTGTTCCCTTTGTTTTTCCCTTTTACCACCATTCTCTATTGCCCTGTACC
ACATCCTTGACCGTCAGGTTAGTATGATTTCTCCCAAAGTTTTTCCACAT
TACATTGACAATTTCTCTTTTCTTGTCTTTTTACCATTTCTC
GCCTGGCGGCGCCTGTTCCAAAAAGAAGGNGACCNANAGAATTTCCCAAA
AAATCCCAGAGGNNNACACTGGGCCAAGNACCGGGAGGACACATTTTTCC
TCGTCTCTCAAGAAACTCAAAGCTTGAAGGAAATAAGAACATACAAACAA
TCAAAATGCATACTTGGAGAAAGATCCCAAGTCTGAGGTATCAAAGATTT
GGAATCAGAAGTTCTTGCTGTATCTTTAGCACTGATAGCAGCACATTCTC
AGCGTGTGGAGCTTGACTCCTTGAGGGGCAGTGCGGAGTCAAACAGTTTT
TCTTTTGATGCCAGATAGCCTGCATGACAGGGAATTTTTTGGTGTTTTCC
CAANACCAGGCCCACGGATATTTATAAACTATGGGATTAATTTTATGTCC
GAATGTCTACTTTTAATGTGGGGGGGGGGGGGGGGGATCCCTGCATTATG
AAGTTTGATAATCTTTGCTCCACTACTAAACATTTATCTTATGGATAGCC
ATAACACTGCCTTCTACCTTATTAGTAATCGGTACCCATCCTCCTGTGTT
TTACTTGCTCGTATTCCCTACTAGTTCCTTCTTACTACCTATGTTATTTA
TACACACCTTTGCTGCCTTGCCCCTATCCCTTTTTTTTTTTATTTTTACT
CCCTCACTGGTCGTGTATTACTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_m10.b1 MSMg01no069_m10.b1 CHROMAT_FILE:
MSMg01no069_m10.b1 PHD_FILE: MSMg01no069_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:37 2005
         (302 letters)



>mm_chr7_104443812_104444513
          Length = 702

 Score =  561 bits (290), Expect = e-164
 Identities = 299/302 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggataaaaggcatgtgccaccactcctggcttaagtatatttctcattccagggaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 446 ctgggataaaaggcatgtgccaccactcctggcttaagtatatttctcatttaagggaaa 387

                                                                       
Query: 61  ataatgtgtaaatatttgtaaaaagattaactaccacttagcattttaatgaccatctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ataatgtgtaaatatttgtaaaaagattaactaccacttagcattttaatgaccatctgt 327

                                                                       
Query: 121 cactagcaatcttaagtcacttggaccatcttccaatcccaatcccagatgagcccgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cactagcaatcttaagtcacttggaccatcttccaatcccaatcccagatgagcccgttc 267

                                                                       
Query: 181 tatgagtatgtgtcacagacgttaaaacatgacatgacccagtgtatcttgttttatgtt 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 266 tatgagtatgtgtcacagacgttaaaacatgagatgacccagtgtatcttgttttatgtt 207

                                                                       
Query: 241 gaagtctttgatctccttggacttgagctttgtgcaaactgacaaatatggatctatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaagtctttgatctccttggacttgagctttgtgcaaactgacaaatatggatctatttt 147

             
Query: 301 ca 302
           ||
Sbjct: 146 ca 145


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no069_m10.g1 MSMg01no069_m10.g1 CHROMAT_FILE:
MSMg01no069_m10.g1 PHD_FILE: MSMg01no069_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:37 2005
         (177 letters)



>mm_chr7_104365271_104365847
          Length = 577

 Score =  327 bits (169), Expect = 3e-94
 Identities = 175/177 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcaagaaactcaaagcttgaaggaaataagaacatacaaacaatcaaaatgcatacttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 ctcaagaaactcaaagcttgaaggaaataagaacatacaaacaatcaaaatgcagacttg 260

                                                                       
Query: 61  gagaaagatcccaagtctgaggtatcaaagatttggaatcagaagttcttgctgtatctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaaagatcccaagtctgaggtatcaaagatttggaatcagaagttcttgctgtatctt 320

                                                                    
Query: 121 tagcactgatagcagcacattctcagcgtgtggagcttgactccttgaggggcagtg 177
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 tagcactgatagcagcacattctcagtgtgtggagcttgactccttgaggggcagtg 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)