BAC Information

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BAC

Clone NameMSMg01-070F16
Chromosome7 (Build37)
Map Location 18,361,305 - 18,361,714
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30
Downstream genePpia-ps7_184.1, Ceacam14, EG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070F16.T7 (MSMg01no070_f16.b1)MSMg01-070F16.TJ (MSMg01no070_f16.g1)
ACCAG294396AG294397
length730695
length of high quality
(start - end)
71 (73 - 143)411 (71 - 481)
definitionCHROMAT_FILE: MSMg01no070_f16.b1 PHD_FILE: MSMg01no070_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:23 2005CHROMAT_FILE: MSMg01no070_f16.g1 PHD_FILE: MSMg01no070_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAATCCGCGGCGGCCTANGANNCACACTATCGGTACCGCCCNGGAANCC
NAGACATAACCCGCACGCGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGCCCGAGAGAGAGAGAGAGAGAGAGAGAGCAGACAG
CAAAAAAGGAACGAGCAGCGGAACACCCAAACAAACCCCAAGGGAGACAG
ACCAACAGACAAAAAAAACGCAAGAAGGCACAAAAGACAAACTATTCAAG
GACCCAAGACAGGAAAACACTAGAGAAACCAAAGAAAAGGGAAGCACCGA
CACCACAGCTTTTTTTTTTGAACAGAACCACAAGACGAAAGCAGGGACGG
AAGCCTTATGGATCCACCCGCCCCCAAGCAGAGAGACCCCGTCACCAGGG
CAGCGACGGCCAGACGGACAACACGCACAATCCCAGCCAAAACAAAGCAC
CAACGACCACCAACCCACAAGCCGGAAACACCCTCGACGCACCAGACTGG
CCCGCGCCTGAGCCAAACCACGAAGCCCGAACAAAGAAGACAAGGGCGCG
CCCCCGGCACAGTAGAAGGACACCGAGAACAGCACGGGAGCGGACGAAAG
AAACGGAAGCACCCGCCCAAACAACCAAAACGGACGCGAGCAAAAACCCC
GCCAAGGAAGTTTACTTGATCCGGCATGCGCAACGACGACGAAAGAGACC
CCAAGCCCGGAGAACAACACCCCCCCCCTC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGAAACATGAGAAGAGAGTTCAATACATAG
TAAAGAATTCATTGAGGAAAACTGATTGAAAAGAGATCATGTCATGTAGC
TTTTTTTCCATCAAGTTCTATAGACATACTCAGATGCATACATGGAGGTA
GAGAGAGAGAGACATAAACACACCTGCTTAGAAACTAGGGCTTAACTCTT
TTATTAAATACACAAGTACCAAGATTCCATTCTGTTTCTTCTAGCTTCAC
TTTTACCTTATTTTTAAAAGGAAGGTTTAAAGATTTATTAATATTTATGG
ATGTTATTCCTGCATGTGTTCTTTTGTATTAAGTATCAGCATAGAGAAGA
AGAAGGTCCATGTTTCTTAGGAGTACAGAAACAAGCAGGGGTGACATGCC
ATGTATGTACTATAAAAATACACACTTTGAAATAGTACCCTGTGCTCTTA
ACCACTAAATCATCTCTTCAGGTCCTAGCCTGACTTCCTTTTTTTTTTCC
ATTTTTTATTAGGAATTTAGCTCATTTACATTTCCAATGCTAAACCAAAA
GTCCCTCATACCCCACCCCCCACTCCCTTACACACCTCATCCCCCTTTTT
GGACCTGGAGAACCCCTGTACTGGTGCCATTATATATTTTTGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_f16.g1 MSMg01no070_f16.g1 CHROMAT_FILE:
MSMg01no070_f16.g1 PHD_FILE: MSMg01no070_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:23 2005
         (411 letters)



>mm_chr7_18361105_18361914
          Length = 810

 Score =  748 bits (387), Expect = 0.0
 Identities = 405/411 (98%), Gaps = 1/411 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaacatgagaagagagttcaatacatagtaaagaattcattgaggaaaactgattgaa 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaacatgagaaaagagttcaatacatagtaaagaattcattgaggaaaactgattgaa 260

                                                                       
Query: 61  aagagatcatgtcatgtagctttttttccatcaagttctatagacatactcagatgcata 120
           |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 aagagatcatgtcatgtagc-ttttttccatcaagttctgtagacatactcagatgcata 319

                                                                       
Query: 121 catggaggtagagagagagagacataaacacacctgcttagaaactagggcttaactctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 catggaggtagagagagagagacataaacacacctgcttagaaactagggcttaactctt 379

                                                                       
Query: 181 ttattaaatacacaagtaccaagattccattctgtttcttctagcttcacttttacctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttattaaatacacaagtaccaagattccattctgtttcttctagcttcacttttacctta 439

                                                                       
Query: 241 tttttaaaaggaaggtttaaagatttattaatatttatggatgttattcctgcatgtgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttttaaaaggaaggtttaaagatttattaatatttatggatgttattcctgcatgtgtt 499

                                                                       
Query: 301 cttttgtattaagtatcagcatagagaagaagaaggtccatgtttcttaggagtacagaa 360
           ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 500 cttttgtattaagtatcagcagagagaagaagaaggtccatgtttcttaggactacagaa 559

                                                              
Query: 361 acaagcaggggtgacatgccatgtatgtactataaaaatacacactttgaa 411
           |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 560 acaagcaggggtgacatgccatgtatgtactagaaaaatacacactttgaa 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 810
Length adjustment: 9
Effective length of query: 402
Effective length of database: 801
Effective search space:   322002
Effective search space used:   322002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)