BAC Information

Click to search

BAC

Clone NameMSMg01-071B18
Chromosome7 (Build37)
Map Location 94,994,624 - 94,994,889
singlet/doubletsinglet
Overlap geneGrm5
Upstream geneVmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr
Downstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071B18.T7 (MSMg01no071_b18.b1)MSMg01-071B18.TJ (MSMg01no071_b18.g1)
ACCAG294972AG294973
length701699
length of high quality
(start - end)
271 (43 - 313)126 (71 - 196)
definitionCHROMAT_FILE: MSMg01no071_b18.b1 PHD_FILE: MSMg01no071_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:24 2005CHROMAT_FILE: MSMg01no071_b18.g1 PHD_FILE: MSMg01no071_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAA
TTCCTTTGCTTCTCCATGTTTACTTTGTGTTCTGTCAGCTCATTTGTTTC
CTGCTGGGCTTTTGTCATTTATTTCTACTCAATTATTTGGAAAACTGTTA
CAACTAGGCTGAAAAGACAGTGGAGTGTGTTTCCCAGTGTGGTTCAGTGC
AGTACCAAGCTGATGTGAAAACAAACTCTTAGTACATTTTCAGAATCAAG
CATATTGAGAAAGCACACCACACTGGTTATAGAATCCCAGGATGAGGTAT
GGGGTGGAGGTAGATGAGAAGCCCAGAGGAACAAGAGAATAACTGGAGAT
AAGCATGGGTGGATATTTAGTTTCCCCTCTGATAACCCCCATCCCCTCCT
CCTGCCTCTGCTCACCAACCCACTTCATCCCCACTTCCTGGCCCTGGCAT
TCCCCCACACTGTGCGCTTATAACCTTCACAGGAGCCATGAGTCCCTCCA
TGTGTTTTCTTTTGCCCGTGGATTAGTCCCAGGGAGCTCTGGTTTTACTA
GCTAGTTCATATTGTCGTTCCTCCTATGTTTCTGCAAACCCTTTCTTATT
TTTGGCTCCTTTCTCTAGTTCCCTATTTGCGGACTTTGCGATCACCCCAT
TGGATGGTTGTGAACATTCCCTTCTGTATTTGTCTCCCTATGGCATACCC
T
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCCTATACTGGGGCATCAAGCCTTCACAAG
ACCAAGGGCCTCTCCTCTCATTGATATCTCAAAGGCCATCCTCTGCTATA
TATGTGGCTGGAGCCTTGGTTCCCTTCATGCGTACTCTTTTGTTAGCGGT
TTAGCTCCTGGGAGCTCTGGTGGTACTGGTTGGCTCATATTGTTTTTCCT
ACTATGGAGCTGCAAACCACTTCAGTTCCTTGGGTCCTTTCTCTAGTTCC
TCCATTGGGGATTTTGTGCTCAGTCCAATGGATGGCTGTAAGAATCCTCT
TCTATATTCGCCAGGTTCTGGCAGAGCCTCTCTTGATACAGCTATATGCA
CTTGTTGTCCTCCTTCTTAATGCCTGGTTTTGATGACTGCATATGGGTTA
GATCCTCTGCCGGCACAGTCTCTGTACGCTCTTTTCTTCTTTTTCTGCTC
CTCACTTTGTCTCTGTACCTCTTCTTTAGGCTATTTTTGATTCCCCTTCT
AACAAGTTTACACGTATCCCCACTGTGGTCTTCTTTCTTCTTGATTTTCA
TGTGCCCTCCGATTTGCTTTTCTTGTTAATTCTGAACATCTTGGTTAATT
TTTTTCTTATTAGGGCACTGCATTCCATGTGTTGTCTTCTGTGATTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_b18.b1 MSMg01no071_b18.b1 CHROMAT_FILE:
MSMg01no071_b18.b1 PHD_FILE: MSMg01no071_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:24 2005
         (271 letters)



>mm_chr7_94994418_94995089
          Length = 672

 Score =  499 bits (258), Expect = e-146
 Identities = 264/266 (99%), Gaps = 1/266 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   aattcctttgcttc-tccatgtttactttgtgttctgtcagctcatttgtttcctgctgg 65
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aattcctttgcttcatccatgtttactttgtgttctgtcagctcatttgtttcctgctgg 413

                                                                       
Query: 66  gcttttgtcatttatttctactcaattatttggaaaactgttacaactaggctgaaaaga 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gcttttgtcatttatttctactcaattatttggaaaactgttacaactaggctgaaaaga 353

                                                                       
Query: 126 cagtggagtgtgtttcccagtgtggttcagtgcagtaccaagctgatgtgaaaacaaact 185
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 352 cagtggagtgtgtttcccagtgtggctcagtgcagtaccaagctgatgtgaaaacaaact 293

                                                                       
Query: 186 cttagtacattttcagaatcaagcatattgagaaagcacaccacactggttatagaatcc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cttagtacattttcagaatcaagcatattgagaaagcacaccacactggttatagaatcc 233

                                     
Query: 246 caggatgaggtatggggtggaggtag 271
           ||||||||||||||||||||||||||
Sbjct: 232 caggatgaggtatggggtggaggtag 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 672
Length adjustment: 9
Effective length of query: 262
Effective length of database: 663
Effective search space:   173706
Effective search space used:   173706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)