BAC Information

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BAC

Clone NameMSMg01-071J12
Chromosome7 (Build37)
Map Location 116,761,881 - 116,762,147
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5
Downstream geneLOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071J12.T7 (MSMg01no071_j12.b1)MSMg01-071J12.TJ (MSMg01no071_j12.g1)
ACCAG295340AG295341
length698729
length of high quality
(start - end)
273 (45 - 317)131 (185 - 315)
definitionCHROMAT_FILE: MSMg01no071_j12.b1 PHD_FILE: MSMg01no071_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:03 2005CHROMAT_FILE: MSMg01no071_j12.g1 PHD_FILE: MSMg01no071_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGA
ATTCCTATGTTGCTGTGGGGATTCTGGGCTTATCACCACTTAAGGATCTG
TAGTAGTCTGCCATTTCTACTTGGGTTTTATGTTGTGTTTTTGTATATTA
TCTTCAGCATATATTTGCGAGTTAAATTCAAGTCATCCAAAGTCTGGTTT
TGGGAATTTTGTAGCATACTGAAGGTGAGTCAACATCACAAGGAATTCTG
CAAGGGATAAGCGTTACAGATTCCATCTGGGCCCCCCACCCCTCCCCCAG
CATTATTTTGAGGATTAGCATTGGAGAATGGCCTCCTTGAGCCTCATTGT
CTACATCCTCATCAGCCTCCACCTTCCCACATGCAGTCAATCCATTTACC
AACCCCGAGTTCTACTTGAAAAATATATCTACTATATTGCTGGAGGAGAG
GTACTAACAATTGGCGGGTGGCGTATGAGAGCTGAGTGCCTAATTTGAAT
TGTTTTTGACTAATAGTATCTTGACACTGCACCTCACACCCCATACTCTA
TTCCTCTGCCACCCCTTTATGAGATATACTCACACAAAGTTTTATTTTGG
TAGGAGGCTGGCTCATTGAATATTGTCCAGTTTGCGATGAGGTCAGGCAC
TGCTTAATGCTTTGTTACTCCAGTTTTGTTATTCTTGTCATCTGTTCN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGAGTTCGAGGCCAGCCTGGTCTACAGA
GTGAGTTCCAGGATAGCCAGGGATACACAGAGAAACCCTGTCTCAAAAAG
AAAAGGAAAGATAGAAAGATAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA
AGGAAGGAAGGAAGGATGGTAGGAAGGAAGTTTCCTCCTGTTCTACATTA
AATTACTATCAATCCCCCCTTTTCTTCCCCACTCTCTTTTCTCCCCCCTC
TCCTTTTTTTCTTCCCCCCTTTTGTTATAACTTTTTATACTCTCTCTTTT
CCTTTTTTTTTTTTTTCCCCTCCCTTTTTCTTTTTTCCCCCCCCCTCCTT
TTACCCCTCTCCCCATTACCGTTTTCCCCCTTCCTTTTTTGATTTAGATT
AAAACGCTCCGCTACCTCTTTTCCCATATCACCTCCTTCATCCCCCTAAT
TTTCTCCCGCTTTTCGCTATTACTCGACCGAATAACTTTCTCTTTTTCCC
CCCCCCTACGCTCCCCTCTTCCTTTTTTTCCATTAGACACCCTTTCCATT
ATAATTCTTTTATTTTTCTTTTCTGTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_j12.b1 MSMg01no071_j12.b1 CHROMAT_FILE:
MSMg01no071_j12.b1 PHD_FILE: MSMg01no071_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:03 2005
         (273 letters)



>mm_chr7_116761677_116762350
          Length = 674

 Score =  439 bits (227), Expect = e-128
 Identities = 257/267 (96%), Gaps = 1/267 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctatgttgctgtggggattctgggcttatcaccacttaaggatctgtagtagtc 64
           |||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 471 gaattcctatgcagatgtggggattctgggcttatcactacttaaggatctgtagtagtc 412

                                                                       
Query: 65  tgccatttctacttgggttttatgttgtgtttttgtatattatcttcagcatatatttgc 124
           ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| 
Sbjct: 411 tgccatttctacttgggttttatgtcgtgtttttgtgtattatcttcagcatatatttgt 352

                                                                       
Query: 125 gagttaaattcaagtcatccaaagtctggttttgggaattttgtagcatactgaaggtga 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gagttaaattcaagtcaaccaaagtctggttttgggaattttgtagcatactgaaggtga 292

                                                                       
Query: 185 gtcaacatcacaaggaattctgcaagggataagcgttacagattccatctgggcccccc- 243
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 291 gtcaacatcacaaggaattctgcaagggataagcgttacagattccatcagggccccccc 232

                                      
Query: 244 acccctcccccagcattattttgagga 270
           |||||||||||||||||||||||||||
Sbjct: 231 acccctcccccagcattattttgagga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 674
Length adjustment: 9
Effective length of query: 264
Effective length of database: 665
Effective search space:   175560
Effective search space used:   175560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)