BAC Information

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BAC

Clone NameMSMg01-072M08
Chromosome7 (Build37)
Map Location 68,195,010 - 68,195,313
singlet/doubletsinglet
Overlap genenone
Upstream geneSnrpn, EG664849, LOC100041201, LOC100041211, LOC664896, LOC100041229
Downstream geneLOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943, B230209E15Rik, EG620934, LOC100041293
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072M08.T7 (MSMg01no072_m08.b1)MSMg01-072M08.TJ (MSMg01no072_m08.g1)
ACCAG296230AG296231
length687694
length of high quality
(start - end)
411 (44 - 454)591 (74 - 664)
definitionCHROMAT_FILE: MSMg01no072_m08.b1 PHD_FILE: MSMg01no072_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:37 2005CHROMAT_FILE: MSMg01no072_m08.g1 PHD_FILE: MSMg01no072_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGCATCTTTACTTATTATTTATTTTTAAGACCACGGATCTATACTGA
TACTTTAAAAAAGTAATTGCTTTCCCAAGGGACTAACCCAGCTTCTCTTT
ATTATTTATTTATTATTATTATTATTATTATTATTATTATTATTATTATT
ATTTCATTCTACTCAGTGTACCCCTCCCACTCTGCCCTGTGACTGCTCCT
CATCGCATACCTCCTCCCCTTTCGCTGAGAAGATGTCCCTACTCCAAGAG
CCCCCAACAGACTAGACCTCTGCACTCCTTGTGGAATCAAGTCTCTTGTG
GGTTTAGTGCTTCTTAACTCACTGAGGCCAGAGTCTTCTGCTGTATATGG
ATCTCGGGCCTCATCTCAGCTAGTGTATGTTCCCAAGTTGGTGGCTCTGT
GCCTGGGAGATCTCCAGTGTCCAGGTTAGTTGAAACTTCTAGTCTTCCTA
TGGTATTGTCCTCCTCTTCATGTTATTCTAAGTGTTACCTAATTCAACCA
CAAGAGTTACCAACCTCTGTCCATTTCTTGTGTGCAAGTATCTGCATCTG
ACTTTTCCAGCTGCTTGCTGGGCCTCGGAGGACATCCATGCTTGCCTTCT
GTCTGTATATAGAATTTAGCATCTCTGATAGTGTCAC
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAAATCAGGGAAATGCAAATCA
AAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAA
AACACAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGAACACT
CCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAG
TCTGGCAGTTCCTCAGAAATTTGGACATAGTACTACCGGAGGATCCCGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCAGTAAGAAGAA
CACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAACCAGAAGCT
GGAAAGAACACAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGAGG
TACATTTACACAATGGAATACTACTCAGCTATTTAAAAAATGAATTTATG
AAATTGCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAAGT
AACCCAATCACAAAGGAACTCGCACAATATGTACTCACTGATAAGTGGAT
AATAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_m08.b1 MSMg01no072_m08.b1 CHROMAT_FILE:
MSMg01no072_m08.b1 PHD_FILE: MSMg01no072_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:37 2005
         (411 letters)



>mm_chr7_68195010_68195819
          Length = 810

 Score =  524 bits (271), Expect = e-153
 Identities = 292/305 (95%), Gaps = 12/305 (3%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgcatctttacttattatttatttttaagaccacggatctatactgatacttt 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggaattctgcatctttatttattatttatttttaagaccacggatctatactgatacttt 245

                                                                       
Query: 64  aaaaaagtaattgctttcccaagggactaacccagcttctctttattatttat-----tt 118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||     ||
Sbjct: 244 -aaaaagtaattgctttcccaagggactaacccagcttctctttattatttattattatt 186

                                                                       
Query: 119 attattattattattattattattattattattattatta------tttcattctactca 172
           ||||||||||||||||||||||||||||||||||||||||      ||||||||||||||
Sbjct: 185 attattattattattattattattattattattattattatcattttttcattctactca 126

                                                                       
Query: 173 gtgtacccctcccactctgccctgtgactgctcctcatcgcatacctcctcccctttcgc 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtgtacccctcccactctgccctgtgactgctcctcatcgcatacctcctcccctttcgc 66

                                                                       
Query: 233 tgagaagatgtccctactccaagagcccccaacagactagacctctgcactccttgtgga 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  tgagaagatgtccctactccaagagcccccaacagactagacctctgcactccttgtgga 6

                
Query: 293 atcaa 297
           |||||
Sbjct: 5   atcaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 810
Length adjustment: 9
Effective length of query: 402
Effective length of database: 801
Effective search space:   322002
Effective search space used:   322002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)