BAC Information

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BAC

Clone NameMSMg01-072M22
Chromosome7 (Build37)
Map Location 132,758,221 - 132,758,588
singlet/doubletsinglet
Overlap geneIl21r
Upstream geneEG545999, LOC670828, 4933440M02Rik, LOC100043014, Jmjd5, Nsmce1, EG244214, Il4ra
Downstream geneGtf3c1, D430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072M22.T7 (MSMg01no072_m22.b1)MSMg01-072M22.TJ (MSMg01no072_m22.g1)
ACCAG296258AG296259
length694692
length of high quality
(start - end)
444 (69 - 512)394 (73 - 466)
definitionCHROMAT_FILE: MSMg01no072_m22.b1 PHD_FILE: MSMg01no072_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:40 2005CHROMAT_FILE: MSMg01no072_m22.g1 PHD_FILE: MSMg01no072_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAACAGGGTCTTCAAGGATCTTGAAAAGGATCCTGAAAAGCCGGCAAT
CCAGAGAAGAGGAAGAAAAGCTCTCTAGCTCTTTCTGGGTTTTAAATTAC
AGTGATCAATGGGCTAGAGAGGGAGCTCAGAGGTTAAGAACACTGGCTGT
TCTTCACAGGACCCTCATGGGGTCTCACAACCCTCTGCGACTCTAGTCAC
ATGGGATCCTATGTCCTCTTCTGGATTCCACAGACACTCCACTCTCATGC
ATCGAAATGCATGCAGGCAAACACCCATATACATAAAATAAAAGTAAATA
AGTCTTTGAGAAAACCTAAGTCACGATTGTAATTGGTTCTGGGATAAATA
CAAACATGGAGCGCAATGGTAAAGAATAAAGGTCCCACAAGCCTGCAGGA
GATGATCAAATAGTCTGTGAGGTCACCAGGACCACCCTGGCGGAAGGACT
GGACTTCAAGAAGCAATGTACATGAATGTAATCCCAGCATTTTGGAGGTG
GACGTGGGAGCATCAGGAGTTGCAGGTCATCCTATGCTACTGAGCATGTT
TGAAGCCAGCTTGGGACAAATATAGAAGATAATCAAAGAAATGACCCTGC
GGAGAGGTACAGCGTTCTGTGTCACGATTGGGCTGGTCTTCTAT
ATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACAGCTACGACATTTTTAAATATTTAAAG
TGTTCATGTGTACTATGTAACCACACTACCAACTGAGCTGCATGACCTCC
CTGGCTGACTTCAAATGCTATGGTGGTATGAATAGGAATGGCTCCCATAC
ATTCATGTGTTTGAATGCATGGCCATAGGGAGGTGTGGCCTTGTTGGAGG
AAGACAGGCTTTGAGGTCTTATATAGTCAAGCTACACCCCGTGTGAGACA
CAATTTCCTGCTGCTGCTTTTGGATCAAGATGTAGAACTTTGAGATCCTT
CCCCAGCACCATGTCTCCCTGCATGTTGCTGTGTTTCCCAGGACAATAAT
GGACTATACCTCTGAGTCTGTAAGCCAGACACAAATTATATGTTTTCCTT
TATAAGAGTTGTCGAGGTCATGGTGTCTCTTCATGGCAATAAAACCAAAA
TAAGACAAATGCTAAACTAACCCAACACTCTTCAAATAAGCCCACTTGAT
CCCCCTGTATCATCTTTGGGTTAGAATCTGCATATCAGCTTGAGAATGCC
CGAGGTAAACCATGTTCTGTGATCTCTGTCCTCACAACGCCTTTGAAATC
TCAGCGATGCATGCCCTCTTAACTAACGGTATAGGCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_m22.b1 MSMg01no072_m22.b1 CHROMAT_FILE:
MSMg01no072_m22.b1 PHD_FILE: MSMg01no072_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:40 2005
         (444 letters)



>mm_chr7_132757741_132758588
          Length = 848

 Score =  669 bits (346), Expect = 0.0
 Identities = 361/368 (98%), Gaps = 4/368 (1%)
 Strand = Plus / Minus

                                                                       
Query: 81  acagtgatcaatgggctagagagggagctcagaggttaagaacactggctgttcttcaca 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 acagtgatcaatgggctagagagggagctcagaggttaagaacactggctgttcttcaca 789

                                                                       
Query: 141 ggaccctcatggggtctcacaaccctctgcgactctagtcacatgggatcctatgtcctc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ggaccctcatggggtctcacaaccctctgcgactctagtcacatgggatcctatgtcctc 729

                                                                       
Query: 201 ttctggattccacagacactccactctcatgcatcgaaatgcatgcaggcaaacacccat 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ttctggattccacagacactccactctcatgcatcgaaatgcatgcaggcaaacacccat 669

                                                                       
Query: 261 atacataaaataaaagtaaataagtctttgagaaaacctaagtcacgattgtaattggtt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 atacataaaataaaagtaaataagtctttgagaaaacctaagtcacgattgtaattggtt 609

                                                                       
Query: 321 ctgggataaatacaaacatggagcgcaatggtaaagaataaaggtccc----acaagcct 376
           ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||| 
Sbjct: 608 ctgggataaatacaaacatggagcgcaatggtaaagaataaaggtccctcaaacaagccc 549

                                                                       
Query: 377 gcaggagatgatcaaatagtctgtgaggtcaccaggaccaccctggcggaaggactggac 436
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 548 gcaggagatgatcaaatagtctgtgaggtcaccaggaccaccctagcagaaggactggac 489

                   
Query: 437 ttcaagaa 444
           ||||||||
Sbjct: 488 ttcaagaa 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 848
Length adjustment: 10
Effective length of query: 434
Effective length of database: 838
Effective search space:   363692
Effective search space used:   363692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)