BAC Information

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BAC

Clone NameMSMg01-073P22
Chromosome7 (Build37)
Map Location 88,196,433 - 88,196,622
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592
Downstream geneAlpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073P22.T7 (MSMg01no073_p22.b1)MSMg01-073P22.TJ (MSMg01no073_p22.g1)
ACCAG297154AG297155
length713799
length of high quality
(start - end)
190 (120 - 309)---
definitionCHROMAT_FILE: MSMg01no073_p22.b1 PHD_FILE: MSMg01no073_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:14 2005CHROMAT_FILE: MSMg01no073_p22.g1 PHD_FILE: MSMg01no073_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGAATTCCTC
CTGTGTCCCGAAAAAATCCCCACAGCTTTTGGCTCCTCCCGAGTTTGTTT
GTTTGTTTGCCCCTCGCCTGTTTCTGCTTGAAAGGCTTGCATCCCTGGTG
CATCTCCTGATACACGGTCTTGCTTCATCCTGACAGGTACCCACTGCTGG
CCCTTTCCAGACCCTGATCTGAAGTCTGGGCTTTTTTTTTTTTTTTTTTT
TTTTTTGAGACTCGGTCTCATGTTTTAGTACAACTAAAATTCACTATGTA
GCCCAGGAAGCACTTTTTTTCATGGGAATCCTCTTGCTTCAGCCTTCCAA
GTTTTGATAATTTCCCCCCCCCCCCCCCTACCTTATTTCAGGGGGTCTTG
CTTAAAGAGCCCCACAAAAAAAAAAAAAAAAAAAGGGTCAGTTTAGAAGA
ATGTTACTGAATGGCCAAGCTTCCAGAAACTGTATTCAGGTTGGGTACCA
TAAACAGCGGTCCTCCCCTGTACAAGACGGAGTTCATATCCTGATTCCAG
GTTAGTCACCTACCAGATGGACCTAATACGTTCAAGGGTCAAGGACCATA
AGATGTCTGAATCAAGCACTTTATCTTATTTCGGGTACTATTTTTCTCCT
CTTCTCTCCTCTCCTCTCCATTCCACTTCACTTTTTTCTCCCACACATTT
TCCTCCTTTTTTA
TGGTCTTTTTCGTTNTTTTCTCCTTTTTTTTTCCTCTTTTTCCCTATTCC
ACTCCCCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAACTGAGCATAATCAGAACACAG
TTGAATTTTCACTTAGAGCAATTGGTACGGCAGGGCAAGCACTCCAGTGT
GTAAAGCTGAACAACATTGTCTCTTTCCAACAAAAAAGGATTATTTCTAT
GACTGCTAGAAAGTTAAGACAGTTAAGTAAGTCAACTACATCGTTCAAAT
CTGTTAGGGTGTGCAGTACCCAGTAAGCAATCTTTAACAATTGCAAAATA
TTCAAAACTTCTTAGTAACGAGGAGCCTATGTTCAAATACTGTAGCCCAG
CACACCAGCTCGTTTTTTTTTTTTTTGACATGTCACCCCTAAATCCTAAA
TGTAACTCGAGAAGCTGCTGCGTCCCCCCTCTGAGAAAAAAAAAAATTTT
CCTCCGAGCACGTTCTTTCTGTAAACCTTTGACTCAAGCTGACGCTCAAG
GCGCCTGGACAATCCACGCCTTACATTACCTAAATTTATTTTCCTGCCTC
GCCCCAGGTTTTACCGCCTCTATACTCCATCATTCTTCGCCTCGTTGTAC
TTTCCTCTAGACCTCCCCTTTACGTTCCTTGATACATTCCTTCCCTCTTT
CTTGCCTTTACATCCCCCTTCCATCGCCATCTCTTTCCGTCCCCTCTCCC
CATACCTTTGTATTTGAACGCCTTCTTTCTCTCCCCCTTTCCCCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_p22.b1 MSMg01no073_p22.b1 CHROMAT_FILE:
MSMg01no073_p22.b1 PHD_FILE: MSMg01no073_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:14 2005
         (190 letters)



>mm_chr7_88196233_88196822
          Length = 590

 Score =  344 bits (178), Expect = 2e-99
 Identities = 187/190 (98%), Gaps = 1/190 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttctgcttgaaaggcttgcatccctggtgcatctcctgatacacggtcttgcttcatc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 gtttctgcttgaaaggcttgcatccctggtgcatctcctgatccacggtcttgcttcatc 260

                                                                       
Query: 61  ctgacaggtacccactgctggccctttccagaccctgatctgaagtctgggctttttttt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 ctgacaggtacccactgctggccctttccagaccctgatctgaagtctggactttttttt 320

                                                                       
Query: 121 ttttttttttttttttt-gagactcggtctcatgttttagtacaactaaaattcactatg 179
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttttttttttttttgagactcggtctcatgttttagtacaactaaaattcactatg 380

                     
Query: 180 tagcccagga 189
           ||||||||||
Sbjct: 381 tagcccagga 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)