BAC Information

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BAC

Clone NameMSMg01-074C03
Chromosome7 (Build37)
Map Location 112,378,006 - 112,534,166
singlet/doubletdoublet
Overlap geneEG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik
Upstream geneTrim6, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686
Downstream geneCnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074C03.T7 (MSMg01no074_c03.b1)MSMg01-074C03.TJ (MSMg01no074_c03.g1)
ACCAG297260AG297261
length723702
length of high quality
(start - end)
192 (51 - 242)276 (80 - 355)
definitionCHROMAT_FILE: MSMg01no074_c03.b1 PHD_FILE: MSMg01no074_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:24 2005CHROMAT_FILE: MSMg01no074_c03.g1 PHD_FILE: MSMg01no074_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,533,979 - 112,534,166)(112,378,006 - 112,378,281)
sequence
NCAACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGTGTATCCGACACAAGATTATTTCTTATCTGTGAATAG
TGAAGTCTTGTTCACAAAGATTATATCTTTATCTAGTTAATACTTATATA
CTGGTTATGTGCTAGACCTGGGCACATGGGCTATTCAAGGAGTGGTTAGT
TGGGCCAGGGGTTGGGGGGAATGGTAAATAGTTTGGAGGGTAGAGAGCTC
CCTTCTTGACTTTTTCCCTCCCCTCTTCTCTTCGCTCCGCATTCTCTCTT
TGACCCTTCTTTTCTTACCTCTTTCTTCCTCTCCTGCTTTTCTGTCCCTT
TGCTTCTCTCCCTTTTTTTTTCTCCGCCCCCCCTCCCTGTATTTATTTCT
CTTTTACCTTCTTCCCTTGTTTCTCCCCACTTAAAACAACCCCCCTGATT
TCTCTCGCCCACCTTTACCCTTCCCCCCAACCTATCTTCCCTCCTTTTTT
CTCCCCCTTTCCTTTCCCTTCTTCTCCCTTACTTCCCCCTTTTCCTTTTC
CCCCCTTCCCCCTTTCCTTCTTCTTTTACCCCCCCCCCCCCTCTTTTCTT
TCTTCTTCTTCCTTACTCTTCCCGCCTCCTCTTTCCCCCTTCTCTTACCT
TCCCTCCTCCCCCTTCCTTATTTTTCCCTCCCTTTTATTCACCGCTGCCC
CCCTCTCCTATTCCCCTTTCCCC
CCTATTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCCAGTATCTGGCCTAGAT
GCTACTTTGTTTTGTTTCTCCTGTCTTATCTCAGGGCCCACATGGTGTTT
AATGAGTATTCTGACTCCTGTAAAAGCAATCATGAGAGCTATCCATTCTG
TGTTCCTGGGTCAAATTGGGAGGTAGGTGGTTTTCCTGGGGCGGGGGAAG
GGGAGGGAGATAACATTATGAGACTGATTCTGTAAATACACTAAGTCTCT
GCCCTAATTAAGAATTCTATTGTTGTGAATAATCACTAAGACCAAAGTAA
AGTGGGGAGAATGTTTATAAGGAACCAGATAAAGACATGATACCGCGGAG
TACATGAATGTACCTATGGAAACCAAGACAACCTGTGTGTGTGTGTGCGT
GTGTTTCGTTTCGCTTTCTTTCCTATTATCCCCCCTTATCTGTTATCTTT
CCTTCCCTTTTTTCCTTCTTTTTCCTTCTTCTTTCCCTTCTCTCCTTGTT
TCCACCCTCCCTCCCCCTCCCGATCTTTTCATCCCTCCTTACCCCCTTTT
CCTCCCCCCTCTTCCCTCATACCGTCTATCCCCTTTTTCCCTTCTTTTTT
AACTTTTTACTCCTTTTCCCTCATTACCCTTTCCGCCCCCCTTCCTTTTT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_c03.b1 MSMg01no074_c03.b1 CHROMAT_FILE:
MSMg01no074_c03.b1 PHD_FILE: MSMg01no074_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:24 2005
         (192 letters)



>mm_chr7_112533775_112534366
          Length = 592

 Score =  340 bits (176), Expect = 2e-98
 Identities = 185/188 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagtgtatccgacacaagattatttcttatctgtgaatagtgaagtcttgttca 64
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gaattccagtggatctgacacaagattatttcttatctgtgaatagtgaagtcttgttca 333

                                                                       
Query: 65  caaagattatatctttatctagttaatacttatatactggttatgtgctagacctgggca 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 caaagattatatgtttatctagttaatacttatatactggttatgtgctagacctgggca 273

                                                                       
Query: 125 catgggctattcaaggagtggttagttgggccaggggttggggggaatggtaaatagttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 catgggctattcaaggagtggttagttgggccaggggttggggggaatggtaaatagttt 213

                   
Query: 185 ggagggta 192
           ||||||||
Sbjct: 212 ggagggta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no074_c03.g1 MSMg01no074_c03.g1 CHROMAT_FILE:
MSMg01no074_c03.g1 PHD_FILE: MSMg01no074_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:24 2005
         (276 letters)



>mm_chr7_112377806_112378481
          Length = 676

 Score =  518 bits (268), Expect = e-151
 Identities = 274/276 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctccagtatctggcctagatgctactttgttttgtttctcctgtcttatctcagggccc 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 cctccagtatctggcctagatgctactttgttttgtttctcctgttttatctcagggccc 260

                                                                       
Query: 61  acatggtgtttaatgagtattctgactcctgtaaaagcaatcatgagagctatccattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatggtgtttaatgagtattctgactcctgtaaaagcaatcatgagagctatccattct 320

                                                                       
Query: 121 gtgttcctgggtcaaattgggaggtaggtggttttcctggggcgggggaaggggagggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttcctgggtcaaattgggaggtaggtggttttcctggggcgggggaaggggagggag 380

                                                                       
Query: 181 ataacattatgagactgattctgtaaatacactaagtctctgccctaattaagaattcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataacattatgagactgattctgtaaatacactaagtctctgccctaattaagaattcta 440

                                               
Query: 241 ttgttgtgaataatcactaagaccaaagtaaagtgg 276
           ||| ||||||||||||||||||||||||||||||||
Sbjct: 441 ttgctgtgaataatcactaagaccaaagtaaagtgg 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)