BAC Information

Click to search

BAC

Clone NameMSMg01-074E07
Chromosome7 (Build37)
Map Location 144,379,626 - 144,503,889
singlet/doubletdoublet
Overlap geneEbf3
Upstream geneLOC546009, EG621677, EG668771, Mgmt, EG621804
Downstream gene9430038I01Rik, Txnl2, LOC435235, Tcerg1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074E07.T7 (MSMg01no074_e07.b1)MSMg01-074E07.TJ (MSMg01no074_e07.g1)
ACCAG297364AG297365
length708703
length of high quality
(start - end)
463 (43 - 505)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no074_e07.b1 PHD_FILE: MSMg01no074_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:35 2005CHROMAT_FILE: MSMg01no074_e07.g1 PHD_FILE: MSMg01no074_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,379,626 - 144,380,084)(144,503,606 - 144,503,889)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTTAGATCTCCTTTAACTGTATTCAAAACTAAAACGCAAGGCTGGAG
AGATGGCTTGGCAATCTGCCTGCTATTGCAGAGGACCTGTGTCGGGTTCC
AAACACCTGCCTGGTGACTCACAACCATCTGTAATTTTAGTCTCAGGGGA
CTCAGTGCCCTCCAGAGGCACCAGATGCACACGTGGTGACAGACAAAACA
TAATAGACATGAAAAATAAATAAAGAGGTAGATAGATAGATAGATCTAAC
AAAATAATATTAAACCAATAAATAAAAGGCAGCACATTGAAAAAAAATGT
CTCAAATACTTCAGAGCAGTCCCCTCTAAGAATGTCTTTGTCTCGCCAGC
AGGTTGTGAGAGCCGCTACACGGTTTGGGGGTCTCACTTTTTCCGAGGCA
TTGCAGCCCAGGTGCACAGACTGAAGAGCCATCAGGAAGGAATGGGGTTG
TCTTAGCCATGGTTTCTATTCCTGCACAATCATCTTGACCAAGAAACAAG
TTCGTCCAGGAAAGGGTTTATTCAGCTTATACTCCCCTGTTTGCTGCCCT
CACTACAGGAAGTCAGGACTGTAATTCAAGCTTGTTATAAAGCACCACCT
GATGCATATGTCCCTGCTACGTATGCTACTCTACTGGCTTGCTTCCACTG
CTTTGGCC
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATATTTATTGGAATAAATGGACCGGT
TGCTACAAATAGTTTATGCCCTCATTAAAACAGGACATATATGCTTTATT
AAATGACTTGCGATTGGAATCAAACTCTGTCTTAATTAATTACGGTAATT
AATATTTGACAGAAAAATTCCAAGATCCCCCCCTTGTTTATTTTTAAACG
TTTCTTTCTCTGCTTGAAAACCATTTCATGGGGGTTCTGACCCCTCCCCT
CAACAAAGACAACTGACTGTCCCAAAGCTCATCGAGTTAGGCTGGCTTAG
TTAGTTCTTTTCCTCCTTTCTACCGCCATGGTCTGGTAACACGAGCCATG
TATTTGAATTTAAAAGCTAAATGTGATGGGGTGAGAAGTCACCTTGTTCC
CCTCTAGTCCGTCTTCACCTCTCAGCCCCCCATCTCCATAATTCAAAGTC
TGAGCTCCAGGGGTCACTCAAACCCATCCACTGCTCTGCTCTCTCTCTCA
CCCTCTGTTATACCTTGTAAATAACATAATTACAAGCAGTTCCTTATTAA
ATTATTTAACCTGCCTTGCTCCATCTTTCCGACGAAAACTATTGCCCATC
ACTAATGTGATTTACTGCCGAAAGATGCACCATTGTCTTTTGAGGGAGTC
CTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_e07.b1 MSMg01no074_e07.b1 CHROMAT_FILE:
MSMg01no074_e07.b1 PHD_FILE: MSMg01no074_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:35 2005
         (463 letters)



>mm_chr7_144379422_144380284
          Length = 863

 Score =  864 bits (447), Expect = 0.0
 Identities = 456/459 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttagatctcctttaactgtattcaaaactaaaacgcaaggctggagagatgg 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttagatctcctttaactatattcaaaactaaaacgcaaggctggagagatgg 264

                                                                       
Query: 65  cttggcaatctgcctgctattgcagaggacctgtgtcgggttccaaacacctgcctggtg 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttggcaatctgtctgctattgcagaggacctgtgtcgggttccaaacacctgcctggtg 324

                                                                       
Query: 125 actcacaaccatctgtaattttagtctcaggggactcagtgccctccagaggcaccagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actcacaaccatctgtaattttagtctcaggggactcagtgccctccagaggcaccagat 384

                                                                       
Query: 185 gcacacgtggtgacagacaaaacataatagacatgaaaaataaataaagaggtagataga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcacacgtggtgacagacaaaacataatagacatgaaaaataaataaagaggtagataga 444

                                                                       
Query: 245 tagatagatctaacaaaataatattaaaccaataaataaaaggcagcacattgaaaaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagatagatctaacaaaataatattaaaccaataaataaaaggcagcacattgaaaaaaa 504

                                                                       
Query: 305 atgtctcaaatacttcagagcagtcccctctaagaatgtctttgtctcgccagcaggttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgtctcaaatacttcagagcagtcccctctaagaatgtctttgtctcgccagcaggttg 564

                                                                       
Query: 365 tgagagccgctacacggtttgggggtctcactttttccgaggcattgcagcccaggtgca 424
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 565 tgagagccgctacacggtttgggggtctcactttttctgaggcattgcagcccaggtgca 624

                                                  
Query: 425 cagactgaagagccatcaggaaggaatggggttgtctta 463
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagactgaagagccatcaggaaggaatggggttgtctta 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no074_e07.g1 MSMg01no074_e07.g1 CHROMAT_FILE:
MSMg01no074_e07.g1 PHD_FILE: MSMg01no074_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:35 2005
         (288 letters)



>mm_chr7_144503406_144504093
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatttattggaataaatggaccggttgctacaaatagtttatgccctcattaaaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 484 catatttattggaataaatggaccggttgctacaaatagtttatgccgtcattaaaacag 425

                                                                       
Query: 61  gacatatatgctttattaaatgacttgcgattggaatcaaactctgtcttaattaattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gacatatatgctttattaaatgacttgcgattggaatcaaactctgtcttaattaattac 365

                                                                       
Query: 121 ggtaattaatatttgacagaaaaattccaagatcccccccttgtttatttttaaacgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ggtaattaatatttgacagaaaaattccaagatcccccccttgtttatttttaaacgttt 305

                                                                       
Query: 181 ctttctctgcttgaaaaccatttcatgggggttctgacccctcccctcaacaaagacaac 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 304 ctttctctgcttgaaaaccatttcatggggtttctgacccctcccctcaacaaagacaac 245

                                                       
Query: 241 tgactgtcccaaagctcatcgagttaggctggcttagttagttc 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgactgtcccaaagctcatcgagttaggctggcttagttagttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)