BAC Information

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BAC

Clone NameMSMg01-074L20
Chromosome7 (Build37)
Map Location 94,639,130 - 94,639,616
singlet/doubletsinglet
Overlap geneTyr
Upstream geneOlfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4
Downstream geneGrm5, Ctsc, LOC100039756, Rab38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074L20.T7 (MSMg01no074_l20.b1)MSMg01-074L20.TJ (MSMg01no074_l20.g1)
ACCAG297723AG297724
length712765
length of high quality
(start - end)
482 (45 - 526)486 (127 - 612)
definitionCHROMAT_FILE: MSMg01no074_l20.b1 PHD_FILE: MSMg01no074_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:12 2005CHROMAT_FILE: MSMg01no074_l20.g1 PHD_FILE: MSMg01no074_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTACTGACCAATACTGAATGGCTGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGCAAATGCAAATCAAAACAACCCTGAGTTTC
CATCTCATACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAG
ATGCTGGCAAGGATGTGGAGAAGAAGGAACACTCCTCCATTGTTGGTGGG
ACTGCAAGTTGGTACAACCACTTGGGAAATCAGTTTGGCAGTTCCTCAGA
AAATTGGACATAGTTCTATCAGAAGATCCAGCAATACCACCCCTGGGCAT
ATACCCAGAAGATGATCCAACATGTAATAAGGACACATGCTCAAATATGT
TCATAACAGCCTTATTTATAATAGCCTGATAATGTAAAGAACCCAGATGT
CCCTCAACCGAGCAATGGATAAAGATAATGTGGTACATTTACACAATGGA
GTACTACTCAGCTATTAAAAACAATGAATTTATGAAACTTTTAGACAAAT
GGATGGATATGGAGGATATCATCCTAAGTGAGGTAACCCAATCACCAAAG
AACACACATGATATGCACTCACTGACAAAGGGATATTAGCCCAGAAGCTC
AGAATCCTTAGAAGAGGGATTAAAATACCCATGCAAAGAGCTACAGATAC
TAATTTTGGAGG
NNNNNNNTTTTNNNNNNNCCCCCCCCCCCCCCCNNNCCNCAATCATATTT
TTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAGTTACAATATTCGATTTGT
TATATAGCATTACTTGATGCAGAAAGACTGAAGGATTATCGAAATTATCA
AAAGTTGCAATAAAACCACAGCAGACTTGCTTATTGTAGTAAGTCCTGAT
GTATAACTGCTAAAATATTGCCTACAACCTTTTATTGCATTTATAGGGCT
ATGGAGGAAAAGGATTTTTTATGTAAAATTAGAAAGTAGAGGGGGAAAAA
TCACTAAGAAAAACAAGCATAATTTGAAAAAAGATAATTAACAAAACAAC
AATAACTTTGCAAACAAACAACATTATTTTAAAATGAGGTCAAATGAATA
CAGTTTGCTCTATATACTTAAGTTTTGCACTGTCCAGGGACAAACAGTTG
CAGACATAACAAATAAGCTAATTCTGCTTGTCTGTTTTCTTTATTCACAC
AACCTGTCTTGTTAAAATCCTTCTAAAATGAAGACTTTTTTTCTCTTCCT
CATTTCCCATTAGAGGAAGTTTAGAGAGCATGAATAAAGGGATATTGTCA
AATCAGATGATATGTGTAGATGAATGTGGCTTTATGAAACCCTGTTCAGT
GAATATGTGCTGAAGAAAATGATATGTACCATTTCCAAAGAAAAGTAAAT
AATGACTTTACGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_l20.g1 MSMg01no074_l20.g1 CHROMAT_FILE:
MSMg01no074_l20.g1 PHD_FILE: MSMg01no074_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:12 2005
         (486 letters)



>mm_chr7_94638930_94639816
          Length = 887

 Score =  864 bits (447), Expect = 0.0
 Identities = 477/487 (97%), Gaps = 1/487 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcagttacaatattcgatttgttatatagcattacttgatgcagaaagactgaaggat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 687 tctcagttacaatattcgatttgttatatagcattacttgatgcagaaagtctgaaggat 628

                                                                       
Query: 61  tatcgaaattatcaaaagttgcaataaaaccacagcagacttgcttattgtagtaagtcc 120
           ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 627 tattgaaattatcaaaagttgcaataaaaccacagcagacttgcctattgtagtaagtcc 568

                                                                       
Query: 121 tgatgtataactgctaaaatattgcctacaaccttttattgcatttatagggctatggag 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 567 tgatgtataactgctaaaatattgcctacaaccttgtattgcatttatagggctatggag 508

                                                                       
Query: 181 gaaaaggattttttatgtaaaattagaaagtagaggggg-aaaaatcactaagaaaaaca 239
           |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 507 gaaaaggactttttatgtaaaattagaaagtagagggggaaaaaatcactaagaaaagca 448

                                                                       
Query: 240 agcataatttgaaaaaagataattaacaaaacaacaataactttgcaaacaaacaacatt 299
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agcaaaatttgaaaaaagataattaacaaaacaacaataactttgcaaacaaacaacatt 388

                                                                       
Query: 300 attttaaaatgaggtcaaatgaatacagtttgctctatatacttaagttttgcactgtcc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 attttaaaatgaggtcaaatgaatacagtttgctctatatacttaagttttgcactgtcc 328

                                                                       
Query: 360 agggacaaacagttgcagacataacaaataagctaattctgcttgtctgttttctttatt 419
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agggataaacagttgcagacataacaaataagctaattctgcttgtctgttttctttatt 268

                                                                       
Query: 420 cacacaacctgtcttgttaaaatccttctaaaatgaagactttttttctcttcctcattt 479
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 267 cacacaacctgtcttgttaaaatccttctaaaatgaagactttttttctcctcctcattt 208

                  
Query: 480 cccatta 486
           |||||||
Sbjct: 207 cccatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 887
Length adjustment: 10
Effective length of query: 476
Effective length of database: 877
Effective search space:   417452
Effective search space used:   417452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)