BAC Information

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BAC

Clone NameMSMg01-074L21
Chromosome7 (Build37)
Map Location 89,159,105 - 89,241,740
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1
Downstream geneSh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074L21.T7 (MSMg01no074_l21.b1)MSMg01-074L21.TJ (MSMg01no074_l21.g1)
ACCAG297725AG297726
length701671
length of high quality
(start - end)
237 (129 - 365)482 (55 - 536)
definitionCHROMAT_FILE: MSMg01no074_l21.b1 PHD_FILE: MSMg01no074_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:12 2005CHROMAT_FILE: MSMg01no074_l21.g1 PHD_FILE: MSMg01no074_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,241,505 - 89,241,740)(89,159,105 - 89,159,586)
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGAAATGATGCAAACAGATGACTGACTTTCAACTGAGGTACCCA
CACAAGTCAACAAGAGGGAAGTGTCGCCTTTCAACCAATGGATCTGAGAA
ACAACTGGGTAAACACACAGGACTAAGCAAGCCTGGACCCCTATTGTGCA
CACACACAATGTTAGTATGAGATGGACTGCACACCCAAACATGAAATCTA
GGGCTCTAACACTTTAGATGTAAAAGAAGCAAAGACATGGAAAGCACTAA
ATATAAAAGAACATTTTGAAGGTGGTGGTGCTGCACACTTTAATCCCAGC
ACTCAGGAGGCAGATGTTAGCTGATCACTGACCTCAAGGCCAGCCTAGTC
TACAAAGCGAGTTCTAGGACACCCAAGGCTACCAAAGAAATCCTGTCTCA
AAAAACAAAATAAAAAAAAGAAAATTTGATAAATTGGATGACATTAAAGG
GAAAATGATGTTCTTAGAATACACCATGGAAAAAATGAAAGGGAGATGCC
AGACTGGAGAAAGTCAGAGCAAGCCTTCAGATTTGTGATCAGAATAAAGA
ACTCCTCTAAAATCTACCATAAAAGGGCAAAGAGCTTGACTCAAAACAGG
AAAAAGATTTAACTTAACCCCTTCAGACTCAGGCAACATCACCAAAGAGG
A
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXATTTACTCTCAGCGGATCCTCCAGTTTGCATGGATTAGCAGGTTCA
CTTTGCATAATAGGTTGGCCAAAAGTACACTTCTGAGGGCTACTTATATA
TCTGCTCTAAGAAATAAACCCAATTAGAGGCCTCTTCCCTTCTTAGTACA
GAAGACAAGGTTCATTAATGATAATGAGGGTCTGAGCTACATCAGGCCCT
AGGTTTGTAATTAATCTTGTACAGGCTTTCCCGCTTGAAAATATTGAAGA
ATATCAAAGTCGTGAAGATCGCCCCCGGCTAGAACTCAAGCACGTGAAAA
AGGAAGGGCAGGCTCCTACACAGCGTTTTGGCTGGTCTTGGACAATGCCA
CTTCTGACGATGCGCTCAGCTTGGAAGGCGTAACCATAATTAGGTCAAAT
GAAAGCCTTTAGATAACTCATCAGGATTGACTATGAAAAATCCATACTTT
CTATATTCGATGGCATTGAAAAAGATGTCCAGAATAAGTGACAAAGCACA
GGAGCACAGAGCTTTTAAGACATGGCTTGCTGGGCTCTGGTCAAAGACCC
CCCCCCCCCAATTCAAAAATGGCTTGCCAGCTCTAGATTCAGTCAAGATT
GAACGTGGGGAGAGATTGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_l21.b1 MSMg01no074_l21.b1 CHROMAT_FILE:
MSMg01no074_l21.b1 PHD_FILE: MSMg01no074_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:12 2005
         (237 letters)



>mm_chr7_89241349_89241985
          Length = 637

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcaaccaatggatctgagaaacaactgggtaaacacacaggactaagcaagcctggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttcaaccaatggatctgagaaacaactgggtaaacacacaggactaagcaagcctggac 333

                                                                       
Query: 61  ccctattgtgcacacacacaatgttagtatgagatggactgcacacccaaacatgaaatc 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ccctattgtgcatacacacaatgttagtatgagatggactgcacacccaaacatgaaatc 273

                                                                       
Query: 121 tagggctctaacactttagatgtaaaagaagcaaagacatggaaagcactaaatataaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tagggctctaacactttagatgtaaaagaagcaaagacatggaaagcactaaatataaaa 213

                                                                   
Query: 181 gaacattttgaaggtggtggtgctgcacactttaatcccagcactcaggaggcaga 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaacattttgaaggtggtggtgctgcacactttaatcccagcactcaggaggcaga 157


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no074_l21.g1 MSMg01no074_l21.g1 CHROMAT_FILE:
MSMg01no074_l21.g1 PHD_FILE: MSMg01no074_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:12 2005
         (482 letters)



>mm_chr7_89158905_89159786
          Length = 882

 Score =  893 bits (462), Expect = 0.0
 Identities = 477/482 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttactctcagcggatcctccagtttgcatggattagcaggttcactttgcataatagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttactctcagcggatcctccagtttgcatggattagcaggttcactttgcataatagg 260

                                                                       
Query: 61  ttggccaaaagtacacttctgagggctacttatatatctgctctaagaaataaacccaat 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggccaaaagtatacttctgagggctacttatatatctgctctaagaaataaacccaat 320

                                                                       
Query: 121 tagaggcctcttcccttcttagtacagaagacaaggttcattaatgataatgagggtctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaggcctcttcccttcttagtacagaagacaaggttcattaatgataatgagggtctg 380

                                                                       
Query: 181 agctacatcaggccctaggtttgtaattaatcttgtacaggctttcccgcttgaaaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctacatcaggccctaggtttgtaattaatcttgtacaggctttcccgcttgaaaatat 440

                                                                       
Query: 241 tgaagaatatcaaagtcgtgaagatcgcccccggctagaactcaagcacgtgaaaaagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaagaatatcaaagtcgtgaagatcgcccccggctagaactcaagcacgtgaaaaagga 500

                                                                       
Query: 301 agggcaggctcctacacagcgttttggctggtcttggacaatgccacttctgacgatgcg 360
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 501 agggcaggctcctacacagcgttttggctggtcttggacaatgttacttctgacgatgcg 560

                                                                       
Query: 361 ctcagcttggaaggcgtaaccataattaggtcaaatgaaagcctttagataactcatcag 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 ctcagcttggaaggcgtaaccataattaggtcaaatgaaagcctttagataactcaacag 620

                                                                       
Query: 421 gattgactatgaaaaatccatactttctatattcgatggcattgaaaaagatgtccagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 gattgactatgaaaaatccatactttctatattcgatggcattgaaagagatgtccagaa 680

             
Query: 481 ta 482
           ||
Sbjct: 681 ta 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)