BAC Information

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BAC

Clone NameMSMg01-076A12
Chromosome7 (Build37)
Map Location 13,960,340 - 13,960,777
singlet/doubletsinglet
Overlap geneLOC666225
Upstream geneZfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c
Downstream geneCabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512, EG629219, EG434123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076A12.T7 (MSMg01no076_a12.b1)MSMg01-076A12.TJ (MSMg01no076_a12.g1)
ACCAG298704AG298705
length718706
length of high quality
(start - end)
429 (42 - 470)441 (56 - 496)
definitionCHROMAT_FILE: MSMg01no076_a12.b1 PHD_FILE: MSMg01no076_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:52 2005CHROMAT_FILE: MSMg01no076_a12.g1 PHD_FILE: MSMg01no076_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:52 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAATCCGCGGAAT
TCCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTTTAAATCCAG
GTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGGGCG
TTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGATTC
TTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTATAGT
TGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTTACCCTCTATCAG
CAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAGTGGTCAGAGCAGT
CTCTGTAGGCAAGCTCTCCTCTTTCAGGGAAGGTGTACAGTTATCTGGTG
TTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGGATCTTTCCC
AGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGCTGTCTGGAGTCGAA
GATGTCGCCGCCTGAGAAGCTCTGTGGCTCTTGTCCGGAAGGAGGTCGGC
CGTCTGGAGTTGATGATGGCGCTGCCTCAGAAGCTCTGTGGATCTTGCCG
GGATAGTGTCTGTTTGTCTGGAGCTGAATATGGCGTCGCCCAGAAGCTCT
GCGACTCCCGCCCGTCCTAGAAACGGTTGTCACTCTGTATTCTCCCGTCC
ACCCGTCGCCCCTGTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCATCTGATCCCTTACTTACCTCTCAGGAAAGTCAAGTCTCTCTCA
GGCTTAGGTCTAACTAGTTTTCCATTCTCAAATCTGCTTCCAAACTCTGT
GATGGGGACATAAGCCCCAAGTGCAAGGTAGCCAGCATGATGAGGAGTGA
ATTCAAACCAGGAATCTGGAGAGGCAAAATGAGGGTAAACTACATGCTCT
GAGCCTGAAACAGCAGATGCTTAGCATGGGGGAATCCATAGAGTATGGAA
TGCCAAACAAGAGACTACCACATAGAGAGCTGTCTAATCTCAAATTAATT
GGGGATTCTTCTCAATATGTCTAAAAGCCTATTCAAGTGGAAATGTGCCA
TTATTTCAAAAGAACCCTGTTATCATTACTGCCCCAATCTTAAGCCCCTT
TTCCTCCAATTCATAACAGCTGCAACTCTAGAATGTGGAATGACGACGAC
TCTAGAAACACTATAATATGAGGATTACCTGGGGCACTGTTGAATGGATG
AACTATTTATTGTAAGAAGAAAAATCACATGACCATGTTTGCTCTAGAAA
CTTCCTATCAGGTAGCTGTGGAAGACGCATATGACATGGCACAGGTAAAT
CAATGAGGAAGTAATTAAAGAATCCTCCTGAGAGATGCTGGAACTTGGTC
TGAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_a12.g1 MSMg01no076_a12.g1 CHROMAT_FILE:
MSMg01no076_a12.g1 PHD_FILE: MSMg01no076_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:52 2005
         (441 letters)



>mm_chr7_13960140_13960979
          Length = 840

 Score =  810 bits (419), Expect = 0.0
 Identities = 434/439 (98%), Gaps = 1/439 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctgatcccttacttacctctcaggaaagtcaagtctctctcaggcttaggtctaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 catctgatcccttacttacctctcaggaaagtcaagtctctctcaggcttaggtctaact 579

                                                                       
Query: 61  agttttccattctcaaatctgcttccaaactctgtgatggggacataagccccaagtgca 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 578 agttttccattctcaaatctgcttccaaactctgtgat-gggacataagccccaagtgca 520

                                                                       
Query: 121 aggtagccagcatgatgaggagtgaattcaaaccaggaatctggagaggcaaaatgaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 aggtagccagcatgatgaggagtgaattcaaaccaggaatctggagaggcaaaatgaggg 460

                                                                       
Query: 181 taaactacatgctctgagcctgaaacagcagatgcttagcatgggggaatccatagagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 taaactacatgctctgagcctgaaacagcagatgcttagcatgggggaatccatagagta 400

                                                                       
Query: 241 tggaatgccaaacaagagactaccacatagagagctgtctaatctcaaattaattgggga 300
           ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 399 tggaatgccaaccaagagactaccacatagagggctgtctaatctcaaattaattgggga 340

                                                                       
Query: 301 ttcttctcaatatgtctaaaagcctattcaagtggaaatgtgccattatttcaaaagaac 360
           ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 339 ttcttctcagtatgtctaaaagcctattcaagtggaaatgtgtcattatttcaaaagaac 280

                                                                       
Query: 361 cctgttatcattactgccccaatcttaagccccttttcctccaattcataacagctgcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cctgttatcattactgccccaatcttaagccccttttcctccaattcataacagctgcaa 220

                              
Query: 421 ctctagaatgtggaatgac 439
           |||||||||||||||||||
Sbjct: 219 ctctagaatgtggaatgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 840
Length adjustment: 9
Effective length of query: 432
Effective length of database: 831
Effective search space:   358992
Effective search space used:   358992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)