Query= MSMg01no076_k08.b1 MSMg01no076_k08.b1 CHROMAT_FILE:
MSMg01no076_k08.b1 PHD_FILE: MSMg01no076_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:42 2005
(229 letters)
>mm_chr7_108664317_108664945
Length = 629
Score = 393 bits (203), Expect = e-114
Identities = 219/229 (95%), Gaps = 8/229 (3%)
Strand = Plus / Plus
Query: 1 gccaaagcacggctgcgcgcatcctgcacagtttgcggtacgcgccagcttcctgcgcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gccaaagcacggctgcgcgcatcctgcacagtttgcggtacgcgccagcttcctgcgcgc 268
Query: 61 acagagtatctgatggagagactagctagccgcatggcaccaaagaggattcataggcca 120
||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 269 aca--------gatggagagactagctagccgcacggcaccaaagaggattcataggcca 320
Query: 121 cagtgtttgctgatcacaaaataataaatgaaatgttaataggtatgataatgaaaatga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 cagtgtttgctgatcacaaaataataaatgaaatgttaataggtatgataatcaaaatga 380
Query: 181 aatactacatttctgtaggtttgggagctaaatgccatgttattaagtc 229
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatactacatttctgtaggtttgggagctaaatgccatgttattaagtc 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space: 136400
Effective search space used: 136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no076_k08.g1 MSMg01no076_k08.g1 CHROMAT_FILE:
MSMg01no076_k08.g1 PHD_FILE: MSMg01no076_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:42 2005
(199 letters)
>mm_chr7_108830420_108831021
Length = 602
Score = 356 bits (184), Expect = e-103
Identities = 197/202 (97%), Gaps = 3/202 (1%)
Strand = Plus / Minus
Query: 1 atcacat-ataaagataaataagcctaaattatt--aaaaaaatacatatagcaccaaaa 57
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 402 atcacataataaagataaataagcctaaattattaaaaaaaaatacatatagcaccaaaa 343
Query: 58 taaaaactgagaaatagattcccagcagacctgacccagtaagacatctaaaagggtaat 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 taaaaactgagaaatagattcccagcagacctgacccagtaagacatctaaaagggtaat 283
Query: 118 tccttcggcttgggtgcttgcaggaaggaagaaggcctaggcaggcagatgcacatttaa 177
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 282 tccttcggcttgggtgcttgcaggaaggaagaagtcctaggcaggcagatgcacatttaa 223
Query: 178 gtcatttaggattagctcttct 199
||||||||||| ||||||||||
Sbjct: 222 gtcatttaggactagctcttct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 602
Length adjustment: 8
Effective length of query: 191
Effective length of database: 594
Effective search space: 113454
Effective search space used: 113454
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
