BAC Information

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BAC

Clone NameMSMg01-076L20
Chromosome7 (Build37)
Map Location 20,154,776 - 20,155,097
singlet/doubletsinglet
Overlap geneGemin7
Upstream genePsg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868
Downstream geneZfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076L20.T7 (MSMg01no076_l20.b1)MSMg01-076L20.TJ (MSMg01no076_l20.g1)
ACCAG299244AG299245
length729710
length of high quality
(start - end)		84 (67 - 150)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no076_l20.b1 PHD_FILE: MSMg01no076_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:49 2005CHROMAT_FILE: MSMg01no076_l20.g1 PHD_FILE: MSMg01no076_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATCCGCGGAATTC
CTCCTGTTTGCTCCTCCACTCTCACGCGCCCTACCCCCACCTATGTCCTA
ACACCTGGTCCCTCACACACACACACACACACACACACACACACACACAC
ACACACACACACTCACACACACCCCATAACTGCCTTTGGACCCCAATTCC
TGGTGTCCTCTCCCTCTCTCACATCGAGGAGATCTCCAAGAACGCTGCTC
ACCCCTTCATGTGGAACGAGAACCTGGTCTACGTGCTCACCTGCCTTTCC
AAACTGCGAACCGGTCTGCTTGTACGCGTGAACGTGCAAGCTGTTAACCT
GACCAAGCACCCCACGCTTGAGGAGATTCTCACTCCGTCTCCCCTGCACA
ATAGAGACTTACCCCCATCCCGCCCCGTCTTGTTTTGTTCTGTACCGCTC
CGCGGCGCCTGTATTATTTACCCACCGCAGTACCCCGCCCTTTGCTATCC
ATGCCCTCCAAACACCATTCGATGCGCTCCCTTACCTACACTTTCTCACC
CCCTCCCGTCCTCCTTCGACTCTTTTCACCGTCACCGTTCCCCCTTTCTT
CCTCACCCCTCCCCCCTATAACCCCCCCTCTTCCCCTACCTTCCCCCCCC
CCCCTATTTCCCTTACCTATCTCTCTCCCCGCCCCTTCTACGCCCTTTTC
CGCTTCCCAACTAAATCCCCCCTCCCCCG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTCCACTGAGGTAGGAGGATCACC
AGGGAGAAGCCAGCCTAGGCTTCAAGTCAATGTGCTGGAGTCATGTATGC
CTCAAATCACATTCTTACCTGGGCTGGTCCTCCTCATCCCTCCCCCAGGC
AGGTCTGGGCCTCGAATTTTAGGTACATTTATTTATTTGTGCGGTATGAA
GGAAGATAGCTTTCAGGAGTTGGTTCTGTCCTTCCCCATAGGGTCTCAAC
TACCTAACTCAGCGGTCAGCACTCTTTCCCTCTGAGTCATCTCCTTCCCC
TCATGTACCTCAGGCTGCCCTCAAGCTGTCTATGTGGCCAAGAATGACCT
TGAACTTTCTGACCCTCCTGCCTGCGCTCACAGGTGTGTACCGTCACACC
CAGCTTCATGACGTGCTGGTGCTCAAACCTAGGGCCTCCTACCTGCTATG
ATAGCATCCACCACATGTATGCGAGTTGCTTTCCCACCCCATTGCTGAAC
CTTCCCTTTTCTCTTGCTACCTCTCCTACGCGACCGCATGCTTCGTATCC
CTGTGCACTATGTGTCCGCTTGCCGCCCCTGGATTCCCCAAAAGTTCTTT
TGTTTCCCTTGACCTTCGAATTATCCGCCACCCCTACTTGCACATGCATC
GCGACCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_l20.g1 MSMg01no076_l20.g1 CHROMAT_FILE:
MSMg01no076_l20.g1 PHD_FILE: MSMg01no076_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:49 2005
         (284 letters)



>mm_chr7_20154457_20155140
          Length = 684

 Score =  414 bits (214), Expect = e-120
 Identities = 276/322 (85%), Gaps = 40/322 (12%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccactgaggtaggaggatcaccagggagaagccagcctaggcttcaagtcaatgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 attccactgaggtaggaggatcaccagggagaagccagcctaggcttcaagtcaatgtgc 582

                                                                       
Query: 61  tggagtcatgtatgcctcaaatcacattcttacctgggctggtcctcctcat---ccctc 117
           | || |||||||| ||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 581 tagaatcatgtatacctcaaatcacattcttacctgggctggtcctcctcatctcccctc 522

                                                                       
Query: 118 cc-------------------------------------ccaggcaggtctgggcctcga 140
           ||                                     ||||||||| |||||||||||
Sbjct: 521 ccccagccgtttgttgtgtagtcctggctgctctgcaggccaggcaggcctgggcctcga 462

                                                                       
Query: 141 attttaggtacatttatttatttgtgcggtatgaaggaagatagctttcaggagttggtt 200
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 attttagttacatttatttatttgtgcggtatgaaggaagatagctttcaggagttggtt 402

                                                                       
Query: 201 ctgtccttccccatagggtctcaactacctaactcagcggtcagcactctttccctctga 260
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 401 ctgtccttccccatagggtctcaactacctaactcagcggccagcactctttccctctga 342

                                 
Query: 261 gtcatctccttcccctcatgta 282
           ||||||||||||||||||||||
Sbjct: 341 gtcatctccttcccctcatgta 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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