BAC Information

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BAC

Clone NameMSMg01-076P02
Chromosome7 (Build37)
Map Location 36,707,961 - 36,708,092
singlet/doubletsinglet
Overlap genenone
Upstream genePepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507
Downstream geneLOC100043872, EG668988, LOC668507, Tshz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076P02.T7 (MSMg01no076_p02.b1)MSMg01-076P02.TJ (MSMg01no076_p02.g1)
ACCAG299398AG299399
length671725
length of high quality
(start - end)
367 (52 - 418)132 (81 - 212)
definitionCHROMAT_FILE: MSMg01no076_p02.b1 PHD_FILE: MSMg01no076_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:06 2005CHROMAT_FILE: MSMg01no076_p02.g1 PHD_FILE: MSMg01no076_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTACATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGAGATTGGCCTGCCTCTGTCTCCTGAGTGCTGGGATTA
AAGGAACATGCCATCATGCCTGGCTCACTTTTCTTATTTTAGATTTATTT
ACTTTATTGTTTTTGTGCATGGGTGCACCAGGGCATGCCTAGTATCCACA
GAAGTCAGAAGAGGGCATATCTTCCTCTGGGACTGGACCTGCAAACAGCT
GTAAGCTACCACATGAGTGCTGGATAGACCTGGGTCCTCTCAAAACGCAG
CCAGTGCTCTTAACTTCTGAGCCAACTCTCCAACTCTCATTTTCTACGCT
TTTAAGAAATAAGAACTGGAAAAACGGTGATTTAAGCTCCACAATAACCC
TGAGATGCCTTTAAAAGCTCCCGCCACTGTGCTAAGAAGCTCCTTCAGCT
CTCCCCTTCAAATCCACATCATCCACATCATTGTTCAGATTCATTTACCC
GTCATCCAGTGCTTTCCTACACTCAACCACTGCTTCCGATCCCGGTGACT
TCTCCCCCTATCCCCCAGAGCCACCTTGACCCTACGTACCCCACTTCCCC
CCCTGCATTCCTCGCCCTATCTTAATCCCCTCCTCTGTCGATTGTCGCTC
CCCACGTTTTCCCGCCTCCTC
TTTTTCCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGGTCCAGTGATCCTGCG
GCTTCCTCTCTTGGTGAGCCACCCGGTGATGGAATTGCCCCCTGAATATT
ATCCTGTTCTATTATTTTTATCTCGGGTTCCAAATGAAGCACAGGAGGAA
AATACGATGTGGTGCAGCCTCGAATTCTCACGGAGAGGTGTTGGGGTCGG
CTTTAATCACAGGCAGAAACTTGGGGATGAAAGACGCGATCTTTAATTCA
GCCGAGCAGGGCGAGGTTTGCGAAGTACCTTCATATATCGTAGTGCCTGG
GTCTCCCTCGCCTCGTGAGGCCCGCCCTTATTCTGATTCCCCCTGCTTGA
CCCTTTCCTCGCTCGATGCCTTGTACTTCCTTTCTCTTTCTTCGCTCCCC
CTTCACCTCCTCAGTTACTACCTTCCTTACTATCAGCCTTTTCCCTTTCC
TTCCCCTTTGCTTACGCTCTTTCTATCTCCCCTCCTGTTCGCCTCTCCTC
CTGTTTTCCACCCCCTTGCCCCCCTCTTTCCCGCCCCCTCCTCCCCCTTT
CTCCTTTCCCCTTTCCCTTGTCCTTTTCTCTTCTTGTTCTTCTCCCCCGC
TCCTTCCTTTTTTTTCCCTTTATCCTCTCTTTTTTTCCTCCTCTCTCTCC
TTTTCCACCCTTTCCCTCCGGTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_p02.g1 MSMg01no076_p02.g1 CHROMAT_FILE:
MSMg01no076_p02.g1 PHD_FILE: MSMg01no076_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:06 2005
         (132 letters)



>mm_chr7_36707761_36708292
          Length = 532

 Score =  255 bits (132), Expect = 6e-73
 Identities = 132/132 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggtccagtgatcctgcggcttcctctcttggtgagccacccggtgatggaattgccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cttggtccagtgatcctgcggcttcctctcttggtgagccacccggtgatggaattgccc 273

                                                                       
Query: 61  cctgaatattatcctgttctattatttttatctcgggttccaaatgaagcacaggaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cctgaatattatcctgttctattatttttatctcgggttccaaatgaagcacaggaggaa 213

                       
Query: 121 aatacgatgtgg 132
           ||||||||||||
Sbjct: 212 aatacgatgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 532
Length adjustment: 8
Effective length of query: 124
Effective length of database: 524
Effective search space:    64976
Effective search space used:    64976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)