BAC Information

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BAC

Clone NameMSMg01-078C09
Chromosome7 (Build37)
Map Location 27,354,124 - 27,354,514
singlet/doubletsinglet
Overlap geneNlrp9a
Upstream geneLOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a
Downstream geneV1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078C09.T7 (MSMg01no078_c09.b1)MSMg01-078C09.TJ (MSMg01no078_c09.g1)
ACCAG299553AG299554
length711750
length of high quality
(start - end)		389 (44 - 432)231 (77 - 307)
definitionCHROMAT_FILE: MSMg01no078_c09.b1 PHD_FILE: MSMg01no078_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:23 2005CHROMAT_FILE: MSMg01no078_c09.g1 PHD_FILE: MSMg01no078_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:23 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATAGATGTTACATAAATGTTAATAATAGTCCTTAGGAAGATGTATGT
TAAATGGATAATCAACATATAAAAAATAATAGATATATAGATTGTAATGG
AAAGTGATGTGCAGATGAATATAGGAAGAGGTTGATTATATGTAAATAAA
GACAATAATTTTTAAATGGTAGACAAGGGAGACATGTTAAATTCATAGAT
GACAGATACTAGGTGGGTGGACATGATAAAGGAAGATAGATATGTAAAGA
GATACACAAACACACATGCATGGAGTCATGATTTTTGGATATATATATAT
GTGCATATATATATATGTATATATATCCATATCTATATCTATATGGGTTT
ATGAAGGGATAATTTGTGTATAAAATGGCTCTCAAGTAGGGAAGAATTTT
ACCCTCCAGGGGATGCATATAGCATCTAGATGTACTTTGGTTTGCTACTC
TAGGCCCCAGTGTGCTGCTGCCCTTTTACTGATTTTTATTCACTACTATC
CCCCTCTATCATCCTCTTTCCAGCCCCGCTCAATATCCCTAATGTATACC
AAAACAATCTGCTGTTTCTACTCATCCTCCATCAACTTGCGCACGACATG
CTTACTTGCCCCTCATCCCCAATTCTCCCTTATCATCATCTCCCCTCTCC
CTCCTCACATT

CCACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCTGAGAACCAATATAAAATA
GCCAATAGAGTCAACACAGAACTTAGGAAGTTAAACCAAAAGAGCATGAG
TTCAAGACATGTCTAGTCTACATAGTAACTTTGAAGCTGGCCTGAGCATC
ATAGTGAAATATTTACAAAGATAGAAAGAAAAAAACAAAAGGAGAGAAGA
GGCAGAGAGGGGGGAGAGAAGAAAGAATGGCTAGGGAGAGAGAAAATGGG
TGGGTGGCCCCTCTTCCCCTTTTTTTTCTCTTTCCCCCCCCTTTCCCTTT
CTCCCCCTTTCCCCTTCTTCCCTTTTTTTTCTTTTCCTTTTTCCCTTTTT
TCTCCTTCTCTTTTTTCTTTTCCCCTTTCTCCCTCCTTTTCTTTCTTTTC
CTTCTCCTCCCCCTTTTCTCCCTCCCTACCTCTTCTCTTCTTTCCTCCCC
CCTTTTTTCCCCCCTTTCTTCTCTCGCCCCTTTCTCTTCCCCGCCCCCTT
TTCCTTTTCTCCTCTCCCCCACCCTCTCTCCTCATTTCTCCCCCATATTC
ACTTTTATTTTCCCCCTCTTGCCCGCCCTTCCTATTTTCCTTTTCCTCTC
CCCCCCCTATTTTTTCTCTTCCCCCTTTTTTTCTTCCCTCTTTTTCTCCC
CTTTCTTCTCCTTCTCCCTCTTTCATTCCATTTTCCGCTTCCTTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_c09.b1 MSMg01no078_c09.b1 CHROMAT_FILE:
MSMg01no078_c09.b1 PHD_FILE: MSMg01no078_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:23 2005
         (389 letters)



>mm_chr7_27354020_27354808
          Length = 789

 Score =  721 bits (373), Expect = 0.0
 Identities = 384/391 (98%), Gaps = 6/391 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatagatgttacataaatgttaataatagtccttaggaagatgtatgttaaatgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gaattcatagatgttacataaatgttaataatagtccttaggaagatgtatgttaaatgg 436

                                                                       
Query: 65  ataatcaacatataaaaaataatagatatatagattgtaatggaaagtgatgtgcagatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ataatcaacatataaaaaataatagatatatagattgtaatggaaagtgatgtgcagatg 376

                                                                       
Query: 125 aatataggaagaggttgattatatgtaaataaagacaataatttttaaatggtagacaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aatataggaagaggttgattatatgtaaataaagacaataatttttaaatggtagacaag 316

                                                                       
Query: 185 ggagacatgttaaattcatagatgacagatactaggtgggtggacatgataaaggaagat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ggagacatgttaaattcatagatgacagatactaggtgggtggacatgataaaggaagat 256

                                                                       
Query: 245 agatatgtaaagagatacacaaacacacatgcatggagtcatgatttttggatatatata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agatatgtaaagagatacacaaacacacatgcatggagtcatgatttttggatatatata 196

                                                                       
Query: 305 tatgtgcatatatatat------atgtatatatatccatatctatatctatatgggttta 358
           ||| |||||||||||||      |||||||||||||||||||||||||||||||||||||
Sbjct: 195 tatatgcatatatatatgtatatatgtatatatatccatatctatatctatatgggttta 136

                                          
Query: 359 tgaagggataatttgtgtataaaatggctct 389
           |||||||||||||||||||||||||||||||
Sbjct: 135 tgaagggataatttgtgtataaaatggctct 105


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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