BAC Information

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BAC

Clone NameMSMg01-078H08
Chromosome7 (Build37)
Map Location 98,445,951 - 98,446,177
singlet/doubletsinglet
Overlap geneDlg2
Upstream geneSytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078H08.T7 (MSMg01no078_h08.b1)MSMg01-078H08.TJ (MSMg01no078_h08.g1)
ACCAG299788AG299789
length604675
length of high quality
(start - end)
---227 (119 - 345)
definitionCHROMAT_FILE: MSMg01no078_h08.b1 PHD_FILE: MSMg01no078_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:47 2005CHROMAT_FILE: MSMg01no078_h08.g1 PHD_FILE: MSMg01no078_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAAAATTNCNCCCNNNCAACCCATCCCCAAAATCCCNAANCNNNNCCC
NNNNCNCNNNNNNCNATACCCCAACACCAACCCAACACAAAAACCAACAC
ACAACACACCAAAACAACAAACAAAAAACACACACCCCGCCCCCCCCCCC
CCCCCCCCCCCCCCGNNNNNNNNNNNNNNNNAAAAAAAAAAAACACCAAA
AAAAACAAACAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTTTTTTTCCCCCCCCCCCTNNNNNNNNNNNNNNNNNNNCNNNNNNNCN
CNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCNNNCCCCC
NNNNNCNNNNNNNNNCCNCCCCCCCCCNNNNNNNNNNNNNNCCCCCCCCC
CCCCCCCCCCCCCCCCCCCACACACAACAACAAAACANNNNNNNNNNNNN
NNNTNTTNNCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNTTTATCC
AACC
NNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGATCTGTAACCCATTT
TTTTTTTATTTAGGCATAAGATATGACAAGAGAACCTAACTATTCTGAGT
CATATCAAAAACATATCGAGCACATGTAGCATATGAAGCCTAGGACTGCA
TAGGTGTGGCTGAACACAAACCTGTAAATACAATGGGTTTGGTACTTTTG
TTATTAGATTACTGTTTCTAGCACAATCTCTGCACATTAGGGTCCTGTTG
AAATGTCTCAAGATTAGATGTGCCCTTAGATTATGTTAGACAGAAGCCAG
TCAGACTTGAACATTCATATGTTATGAGAATCAGTCTGTTTCTCAGACAG
CACAGTGATTTTGTAGCACAATATGTCTGTTACATGGCAGTTTCTGAATA
GTGATTTTTACTCATATAATTTTACACATGTTGATACCTAAAGTTGGAAG
TCCTACTGTGCCAAATATATAAAATTTCTAGAGCCCTTTAACTGATATGT
ATATACATAATGTTTTTACACAATTTATTTCCATAATTGCTGAATAATTT
TTTGCAGTTTTCCTCTCTATTTTTTCACTTCCCCATTCCCACATGATGAT
CTTTACCAAGGGCATTAAAATGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_h08.g1 MSMg01no078_h08.g1 CHROMAT_FILE:
MSMg01no078_h08.g1 PHD_FILE: MSMg01no078_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:47 2005
         (227 letters)



>mm_chr7_98445751_98446377
          Length = 627

 Score =  393 bits (203), Expect = e-114
 Identities = 221/227 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatatgacaagagaacctaactattctgagtcatatcaaaaacatatcgagcacatgta 60
           |||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 201 agatatgacaagagaaccaaactattcagagtcatatcaaaaacatagcgagcacatgta 260

                                                                       
Query: 61  gcatatgaagcctaggactgcataggtgtggctgaacacaaacctgtaaatacaatgggt 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatatgaagcctaggactgcatgggtgtggctgaacacaaacctgtaaatacaatgggt 320

                                                                       
Query: 121 ttggtacttttgttattagattactgtttctagcacaatctctgcacattagggtcctgt 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgggacttttgttattagattactgtttctagcacaatctctgcacattagggtcctgt 380

                                                          
Query: 181 tgaaatgtctcaagattagatgtgcccttagattatgttagacagaa 227
           |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tgaaatgtctcaagattagatgtgcccttagattatcttagacagaa 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)