BAC Information

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BAC

Clone NameMSMg01-078O14
Chromosome7 (Build37)
Map Location 119,641,890 - 119,642,333
singlet/doubletsinglet
Overlap geneParva
Upstream geneGalntl4, LOC668399, LOC100042678, Usp47, Dkk3, Mical2, Micalcl
Downstream geneLOC627808, Tead1, 4632411J06Rik, LOC434227, Arntl, A630005I04Rik, Btbd10, Pth, LOC100042736
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078O14.T7 (MSMg01no078_o14.b1)MSMg01-078O14.TJ (MSMg01no078_o14.g1)
ACCAG300130AG300131
length703697
length of high quality
(start - end)
442 (50 - 491)321 (75 - 395)
definitionCHROMAT_FILE: MSMg01no078_o14.b1 PHD_FILE: MSMg01no078_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:23 2005CHROMAT_FILE: MSMg01no078_o14.g1 PHD_FILE: MSMg01no078_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGGAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGTAAAATCGATATTTATTTTATGGATTCTGTAGTAACTGC
ACATTCCACATTTATTTCTGTATAACAAGGAGACAGACAGACAGACAGAC
TGGTTGTGTATAGCTGTAGCAGAGGACATTAAAGAGAGATTCCCTAAGGC
AACCATCAAAGGAGTTATCCTAAGGTAACTGACTCCCTCCTGGCCCCTGA
CCTCACCTCCTCAGAGCCAGAGCCATCCAAACCTGCCGGATAGGTTTAGA
TGAGCAGTCTACCTTTAACCCCCTCTGATGCCATTAGCAGGAAGGAACGG
AATTCCTCACTGCACATAGGCCAAACTTATCAGCAAAGCAAATGTTTATT
GAGAAATTTGATCAGTACAAACTCCTCCTGTCCAGCTCCAGCCTCCTCCA
CCTCGGTTTCTTTTATTTAAGCAATTGATATCCCTTTCACACACATGGTA
GGGAGAGTGGGGGCGCGCCCTTCTTCTTATTCCCGTCTATTTCTTTCCCC
TCCTTCTTTTATACCTTTTTTCTTTCCCCCCCCCCCCCTCTTTCCCCTCT
TTCCTATCTCATTCGTATTTCTTTTTACTCTCATTTGTTCCCCCCTACCC
TTCCCTTTTACTCTTAAACTCTTTCTCATCTTCTTCCCCCACCTATTCTC
CCG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTATTTCTTTTCTTCCCCGTGGAAG
GCGAGAGCCAGCTGGAGTTGAGCGTCTCCCCTTTCCCTGTCATTTCTGCT
TTGCTAAACCTCCAGCTGGTTCGGCTCTAGTTAAATCATTTCTCCCGGGG
GCAGGAGTTGCTAAGAAGATTGGAATGTGCTTGGTATTTCAACATGGTTT
CTCTTCTCTCTCTACCAGAAGCACTGGGGGTGGGGGTGGCATTTCTCGGA
CAGTCACCATGAGAACCTATCAGAGCTCCAGGATGCAAAATTCACAGGAG
TCTGGGAGCCCCAAGAACGGGGTGTCCCTGGAGTTTTCATCTCCCAGGCT
TGCCCACGTGGCGCCTGCAGTATTTTATCAACCTAGTGTAGATGCGCTCA
ATCCTGGCATAACCATTAGGGAAGCTTCAGCTTTTGGATTCCAGACCTGT
TAAGATGTGACTCTCTTGAGTTTGCTTATAAGTCTCTCCTATTTGGCAGA
TGATGCCTGCTTTTTGACCTCTCTTCTCTTTTGAACATTGCCAATAATGC
TTTGACTTCCCTTGTTTACTCATCCTTTCGTTTTATGCACGGCCCTTACT
TTTTTTTTTCCTTCCCCGCGTATAACTGCAACCAACATTCCCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_o14.b1 MSMg01no078_o14.b1 CHROMAT_FILE:
MSMg01no078_o14.b1 PHD_FILE: MSMg01no078_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:23 2005
         (442 letters)



>mm_chr7_119641692_119642533
          Length = 842

 Score =  733 bits (379), Expect = 0.0
 Identities = 425/445 (95%), Gaps = 11/445 (2%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttctgtaa-aatcg-atatttattttatggattctgtagtaactgcacattccacattta 65
           |||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttctgtaataat-gtatatttattttatggattctgtagtaactgcacattccacattta 257

                                                                       
Query: 66  tttctgtataacaaggagacagacagacagacagac--------tggttgtgtatagctg 117
           ||||||||||||||||||||||||||||||||||||        ||||||||||||||||
Sbjct: 258 tttctgtataacaaggagacagacagacagacagacagacagactggttgtgtatagctg 317

                                                                       
Query: 118 tagcagaggacattaaagagagattccctaaggcaaccatcaaaggagttatcctaaggt 177
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 318 tagcagaggacattaaagagagattccctagggcaaccatcaaaggagttatcctaaggt 377

                                                                       
Query: 178 aactgactccctcctggcccctgacctcacctcctcagagccagagccatccaaacctgc 237
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 378 aactgactccctcctggcccctgacctcacctcctcagagccagagtcgtccaaacctgc 437

                                                                       
Query: 238 cggataggtttagatgagcagtctacctttaaccccctctgatgccattagcaggaagga 297
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cggataggtttagatgagcggtctacctttaaccccctctgatgccattagcaggaagga 497

                                                                       
Query: 298 acggaattcctcactgcacataggccaaacttatcagcaaagcaaatgtttattgagaaa 357
           || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acagaattcctcactgcacacaggccaaacttatcagcaaagcaaatgtttattgagaaa 557

                                                                       
Query: 358 tttgatcagtacaaactcctcctgtccagctccagcctcctccacctcggtttcttttat 417
           ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 558 tttgaccagtacaaactcctcctgcccagctccagcctcctccacctcgatttcttttat 617

                                    
Query: 418 ttaagcaattgatatccctttcaca 442
           |||||||||||||||||||||||||
Sbjct: 618 ttaagcaattgatatccctttcaca 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)