BAC Information

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BAC

Clone NameMSMg01-078P11
Chromosome7 (Build37)
Map Location 98,093,938 - 98,094,434
singlet/doubletsinglet
Overlap genenone
Upstream geneEed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
Downstream geneDlg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078P11.T7 (MSMg01no078_p11.b1)MSMg01-078P11.TJ (MSMg01no078_p11.g1)
ACCAG300172AG300173
length684685
length of high quality
(start - end)
565 (44 - 608)606 (73 - 678)
definitionCHROMAT_FILE: MSMg01no078_p11.b1 PHD_FILE: MSMg01no078_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:27 2005CHROMAT_FILE: MSMg01no078_p11.g1 PHD_FILE: MSMg01no078_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGA
ATTCATTGGCAATAAAAGAACTTTCTGACCTAAGGTCAACAATCAATAAA
TGTGACCTCTGAAACTGAAAAGAGTTTACATGGCAAAGAACACAATCATT
TGGATAAATTTGCAGCCTACAGGATGGGAAAAGACCAACTATACATCCAA
TAGAGGGCTAATATTCACAATATATAAAGAAATAAAAATCTAGATACCAA
GAAAAAAGTCCAGTTAAAATGGGGTCAGATCTAAACAGAGATATTAGTGT
TTTGATTGGATTCCTGAGTGTGTGAATTGGAGTTGCAGGGACAATCTCTG
TATCTACATCTATTTCTTGTACCTTTTGGGGGGCTCTTTTTCTTCTCTTT
GTTTTGTCCTGCTCTGATTGTTAGTTTGGGGTTTTTAAAAATATTATATT
TTATTATTATCCCTTAGAAGCTTGTTTGTTTTCTAATGAAAGACATGAGT
ATATCTGATATATCTGACATAAATATATCTATATATATCCATCCATACAT
ACATATACACATACATACATATGTACACATATACACATACAGATATGTGT
ATATGTGCATGTGGATCTGCATGGCTGTCTTTCGCTTTTTTTTTCTTTTC
CTCTTTACCATCTTATTAACCCCTTTCAGTAGGT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGGGAGATTAAAGCTAGGAGGTGGGGC
ACACTTGTAGAGCATGCCCTTGAAAGTAATTTCTTGTTCCTGGTACCCCT
TGCTTGTTATCTGACTTTCATCTGTCATTAAGGGATAACTTACTTCAGTC
TCATGGTCTTCTGTCAAACCATGCTCCACCCCAGAAACAACAGAGCTAAG
TGACTATGGACCACAACTTCTAAAGTTAGCAATCAAACCAAATCTTTACT
CTTTCCAATTTATTTCATTGCTCTGATCTATCATTACAGTAATGAAAAGA
GATTGACACATATTGTCTGAGTATAGTACTTTAGGCACAAAGCTGTATAA
CAGACTTTTACAATATTTCATCCTGCACGACTGAAGCTTCGCCCTATTTT
TTCTTCTGATCACCAAGTGACTACCACTTGATATTTAGTTCCAGTATAAT
TGAGCTCTTTAATTTCATCATGAGAAGAGTTGTGAATTATTGTCCTTCTA
CACCTGGATTATTGCACACAACATGACTTTCAGGGGGTTACATTGAGCTG
TATACATTGTATTGACTTGAGTGCCTCCTTTGAAGAAATGGCTATGAAAA
TAATTCATTCTTTTAACTTATTTTTAGTTTTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_p11.g1 MSMg01no078_p11.g1 CHROMAT_FILE:
MSMg01no078_p11.g1 PHD_FILE: MSMg01no078_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:27 2005
         (606 letters)



>mm_chr7_98093938_98094943
          Length = 1006

 Score =  946 bits (489), Expect = 0.0
 Identities = 495/497 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgggagattaaagctaggaggtggggcacacttgtagagcatgcccttgaaagtaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttgggagattaaagctaggaggtggggcacacttgtagagcatgcccttgaaagtaattt 438

                                                                       
Query: 61  cttgttcctggtaccccttgcttgttatctgactttcatctgtcattaagggataactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cttgttcctggtaccccttgcttgttatctgactttcatctgtcattaagggataactta 378

                                                                       
Query: 121 cttcagtctcatggtcttctgtcaaaccatgctccaccccagaaacaacagagctaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cttcagtctcatggtcttctgtcaaaccatgctccaccccagaaacaacagagctaagtg 318

                                                                       
Query: 181 actatggaccacaacttctaaagttagcaatcaaaccaaatctttactctttccaattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 actatggaccacaacttctaaagttagcaatcaaaccaaatctttactctttccaattta 258

                                                                       
Query: 241 tttcattgctctgatctatcattacagtaatgaaaagagattgacacatattgtctgagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tttcattgctctgatctatcattacagtaatgaaaagagattgacacatattgtctgagt 198

                                                                       
Query: 301 atagtactttaggcacaaagctgtataacagacttttacaatatttcatcctgcacgact 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 197 atagtactttaggcacaaagctgtataacagacttttagaatatttcatcctgcacgact 138

                                                                       
Query: 361 gaagcttcgccctattttttcttctgatcaccaagtgactaccacttgatatttagttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 137 gaagcttcgccctattttttcttctgatcaccaagtgactaccacttgatatttatttcc 78

                                                                       
Query: 421 agtataattgagctctttaatttcatcatgagaagagttgtgaattattgtccttctaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  agtataattgagctctttaatttcatcatgagaagagttgtgaattattgtccttctaca 18

                            
Query: 481 cctggattattgcacac 497
           |||||||||||||||||
Sbjct: 17  cctggattattgcacac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)