Query= MSMg01no078_p16.b1 MSMg01no078_p16.b1 CHROMAT_FILE:
MSMg01no078_p16.b1 PHD_FILE: MSMg01no078_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:28 2005
(511 letters)
>mm_chr7_20005075_20005985
Length = 911
Score = 839 bits (434), Expect = 0.0
Identities = 482/508 (94%), Gaps = 19/508 (3%)
Strand = Plus / Plus
Query: 5 gaattcctcctg-ttcctttctccactctcacgcgccctacccccacctatgtcctaaca 63
|||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 222 gaattcctcctggttg-tttctccactctcacgcgcc-tacccccacctatgtcctaaca 279
Query: 64 cctggtccctcacacacacacacacacacacacacacacacacacacacacacacacaca 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cctggtccctcacacacacacacacacacacacacacacacacacacacacac------- 332
Query: 124 cacacacaccccagactgcctttggagtccaattcctggtgtcctctccctttctcagat 183
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ---------cccagactgcctttggagtccaattcctggtgtcctctccctttctcagat 383
Query: 184 tgaggagatcttcaagaaggctggtcaccccttcatgtggaacgagcacctgggctacgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaggagatcttcaagaaggctggtcaccccttcatgtggaacgagcacctgggctacgt 443
Query: 244 gctcacctgcccctccaacctgggcaccggtttgcgcggaggcgtgcacgtgaagctggc 303
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 gctcacctgcccctccaacctgggcaccgggctgcgcggaggcgtgcacgtgaagctggc 503
Query: 304 gaacctgagcaagcaccccaagtttgaggagattctcactcgccttcgtctgcagaagcg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaacctgagcaagcaccccaagtttgaggagattctcactcgccttcgtctgcagaagcg 563
Query: 364 cggcacacgcgcggcccgccccgccccgccccgccccgccccgccccgcggcgtctgggg 423
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cggcacaggtgcggcccgccccgccccgccccgccccgccccgccccgcggcgtctgggg 623
Query: 424 agggatctaccgaggaggggtgtccctgcaagttccggggtgaagagtatttgatgtgta 483
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 624 agggatctaccgaggaggggtgtccctgcaagttccgggattaagagtatttgatgtgta 683
Query: 484 ttttacgtacatccccgatcctctattg 511
||||||||||||||||||||||||||||
Sbjct: 684 ttttacgtacatccccgatcctctattg 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_p16.g1 MSMg01no078_p16.g1 CHROMAT_FILE:
MSMg01no078_p16.g1 PHD_FILE: MSMg01no078_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:28 2005
(562 letters)
>mm_chr7_20154465_20155426
Length = 962
Score = 963 bits (498), Expect = 0.0
Identities = 557/602 (92%), Gaps = 40/602 (6%)
Strand = Plus / Minus
Query: 1 attccactgaggtaggaggatcaccagggagaagccagcctaggcttcaagtcaatgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 attccactgaggtaggaggatcaccagggagaagccagcctaggcttcaagtcaatgtgc 574
Query: 61 tggagtcatgtatgcctcaaatcacattcttacctgggctggtcctcctcat---ccctc 117
| || |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 573 tagaatcatgtatacctcaaatcacattcttacctgggctggtcctcctcatctcccctc 514
Query: 118 cc-------------------------------------ccaggcaggcctgggcctcga 140
|| |||||||||||||||||||||
Sbjct: 513 ccccagccgtttgttgtgtagtcctggctgctctgcaggccaggcaggcctgggcctcga 454
Query: 141 attttaggtacatttatttatttgtgcggtatgaaggaagatagctttcaggagttggtt 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 attttagttacatttatttatttgtgcggtatgaaggaagatagctttcaggagttggtt 394
Query: 201 ctgtccttccccatagggtctcaactacctaactcagcggtcagcactctttccctctga 260
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 393 ctgtccttccccatagggtctcaactacctaactcagcggccagcactctttccctctga 334
Query: 261 gtcatctccttcccctcatgtagctcaggctggcctcaagctgtctatgtggccaagaat 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtcatctccttcccctcatgtagctcaggctggcctcaagctgtctatgtggccaagaat 274
Query: 321 gaccttgaactttctgatcctcctgcctgtgctcacaggtgtgtaccgtcacacccagtt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gaccttgaactttctgatcctcctgcctgtgctcacaggtgtgtaccgtcacacccagtt 214
Query: 381 ttatgaagtgctggtgttcaaacccagggcctcctacatgctaggagagcatctaccaga 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ttatgaagtgctggtgttcaaacccagggcctcctacatgctaggagagcatctaccaga 154
Query: 441 tgtaggtgagctgcattccaatcccattgctgaaccttcacttttcttttgcaacatttc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tgtaggtgagctgcattccaatcccattgctgaaccttcacttttcttttgcaacatttc 94
Query: 501 aaatgtgaatggatgttttgcattcatgtgtaccatgtgagtgcctggcgcccaaggagt 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 aaatgtgaatggatgttttgcattcatgtgtaccatgtgagtgcctggcgcccaaggagt 34
Query: 561 cc 562
||
Sbjct: 33 cc 32
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
