BAC Information

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BAC

Clone NameMSMg01-079A08
Chromosome7 (Build37)
Map Location 36,566,322 - 36,708,092
singlet/doubletdoublet
Overlap genezfp507
Upstream geneChst8, Pepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3
Downstream geneLOC100043872, EG668988, LOC668507, Tshz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079A08.T7 (MSMg01no079_a08.b1)MSMg01-079A08.TJ (MSMg01no079_a08.g1)
ACCAG300214AG300215
length698690
length of high quality
(start - end)		540 (64 - 603)538 (72 - 609)
definitionCHROMAT_FILE: MSMg01no079_a08.b1 PHD_FILE: MSMg01no079_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:31 2005CHROMAT_FILE: MSMg01no079_a08.g1 PHD_FILE: MSMg01no079_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,566,322 - 36,566,861)(36,707,555 - 36,708,092)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAGATTCCCCTGCCTCTGTCTCCTGAGTGCTGGGATTAAAGGAAC
ATGCCATCATGCCTGGCTCACTTTTCTTATTTTAGATTTATTTACTTTAT
TGTTTTTGTGCATGGGTGCACCAGGGCATGCCTAGTATCCACAGAAGTCA
GAAGAGGGCATATCTTCCTCTGGGACTGGACCTGCAAACAGCTGTAAGCT
ACCACATGAGTGCTGGATAGACCTGGGTCCTCTCAAAACGCAGCCAGTGC
TCTTAACTTCTGAGCCAACTCTCCAACTCTCATTTTCTACGCTTTTAAGA
AATAAGAACTGGAAAAACGGTGATTTAAGCTCCACAATAACCCTGAGATG
CCTTTAAAAGCTCCTGCCACTGTGCTAAGAAGTTCCTTCAGCTCTCCCCT
TCAAACCCACATCACCCACACCACTGTTCAGATTAAATTACCAGTAACCA
GTGTTCTCTAAAATCAACCCATGCCTCGAAAATGTGAACTCTCCCCTAAG
CCAAGAGCACACTGATTTATGATTTAGTACCTACAGATTAAAGCAGATCT
AAGTCTAACTGTGATGGTGGGGATGGAATGTGGTTTTCAAGTTATAAATG
ACAGTGTGGGGTGTCCTCCACAGCCACAGGTGGAAGACATTTGGAAAA

ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTGGTCCAGTGATCCTGCGGCTTCCTCT
CTTGGTGAGCCACCCGGTGATGGAATTGCCCCCTGAATATTATCCTGTTC
TATTATTTTTATCTCGGGTTCCAAATGAAGCACAGGAGGAAAATACGATG
TGGTGTAGCCTGAATTCTCACGGAGAGGTGTTGGGGCGGCTTTAATCACA
GGCAGAAACTTGGGATGAAAGACGCGACTTTAATTCAGTGAGCAGGGGAG
GGGTGGAAGTACTTCATATACGGAGTGCTGGGTCTCTTGGGTGTGAGGCT
GGGCTAGCTGACAGGGGTGGGGAGGCCAGCAAGGTGATGCTGGATACAGC
CTCCCTTCTGCGCCACAGACTAAGAGCAGAGCAGCCCAGAGAGCCCCTCC
TCCTTACCCTGGAAGCCCCGCCAAGAAGCTGGTGACCCCACTGTTATAAT
TTGAATAAGATATGTCCTCCACCTCCCCCGGCTCACTTGTCTCCAGCTGG
TGGGAATCTTGTGAGGTCTGGGGGTGTCTACAGGCCCTTTACAAGATGGG
ACTTTGTTGTGGGGGGCTGATAAAGGTGGATCTTGAGGGTGACATCTGCC
TCTAGTCTAGTCTGGGCAGCCCGAGCTTAACGGCACCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_a08.b1 MSMg01no079_a08.b1 CHROMAT_FILE:
MSMg01no079_a08.b1 PHD_FILE: MSMg01no079_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:31 2005
         (540 letters)



>mm_chr7_36566122_36567061
          Length = 940

 Score = 1036 bits (536), Expect = 0.0
 Identities = 539/540 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgcctctgtctcctgagtgctgggattaaaggaacatgccatcatgcctggctcactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgcctctgtctcctgagtgctgggattaaaggaacatgccatcatgcctggctcactt 260

                                                                       
Query: 61  ttcttattttagatttatttactttattgtttttgtgcatgggtgcaccagggcatgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttattttagatttatttactttattgtttttgtgcatgggtgcaccagggcatgcct 320

                                                                       
Query: 121 agtatccacagaagtcagaagagggcatatcttcctctgggactggacctgcaaacagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtatccacagaagtcagaagagggcatatcttcctctgggactggacctgcaaacagct 380

                                                                       
Query: 181 gtaagctaccacatgagtgctggatagacctgggtcctctcaaaacgcagccagtgctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaagctaccacatgagtgctggatagacctgggtcctctcaaaacgcagccagtgctct 440

                                                                       
Query: 241 taacttctgagccaactctccaactctcattttctacgcttttaagaaataagaactgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taacttctgagccaactctccaactctcattttctacgcttttaagaaataagaactgga 500

                                                                       
Query: 301 aaaacggtgatttaagctccacaataaccctgagatgcctttaaaagctcctgccactgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaacggtgatttaagctccacaataaccctgagatgcctttaaaagctcctgccactgt 560

                                                                       
Query: 361 gctaagaagttccttcagctctccccttcaaacccacatcacccacaccactgttcagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctaagaagttccttcagctctccccttcaaacccacatcacccacaccactgttcagat 620

                                                                       
Query: 421 taaattaccagtaaccagtgttctctaaaatcaacccatgcctcgaaaatgtgaactctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaattaccagtaaccagtgttctctaaaatcaacccatgcctcgaaaatgtgaactctc 680

                                                                       
Query: 481 ccctaagccaagagcacactgatttatgatttagtacctacagattaaagcagatctaag 540
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 ccctaagccaagagcacactgatttatgatttagttcctacagattaaagcagatctaag 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no079_a08.g1 MSMg01no079_a08.g1 CHROMAT_FILE:
MSMg01no079_a08.g1 PHD_FILE: MSMg01no079_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:31 2005
         (538 letters)



>mm_chr7_36707355_36708292
          Length = 938

 Score = 1002 bits (518), Expect = 0.0
 Identities = 533/538 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggtccagtgatcctgcggcttcctctcttggtgagccacccggtgatggaattgccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cttggtccagtgatcctgcggcttcctctcttggtgagccacccggtgatggaattgccc 679

                                                                       
Query: 61  cctgaatattatcctgttctattatttttatctcgggttccaaatgaagcacaggaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cctgaatattatcctgttctattatttttatctcgggttccaaatgaagcacaggaggaa 619

                                                                       
Query: 121 aatacgatgtggtgtagcctgaattctcacggagaggtgttggggcggctttaatcacag 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 618 aatacgatgtggtgtagcctgaattctcacagagaggtgttggggcggctttaatcacag 559

                                                                       
Query: 181 gcagaaacttgggatgaaagacgcgactttaattcagtgagcaggggaggggtggaagta 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 558 gcagaaacttgggatgaaagacgcgactttaattcagtgagcagggtaggggtggaagta 499

                                                                       
Query: 241 cttcatatacggagtgctgggtctcttgggtgtgaggctgggctagctgacaggggtggg 300
           ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 498 cttcagataaggagtgctgggtctcttgggtgtgaggccgggctagctgacaggggtggg 439

                                                                       
Query: 301 gaggccagcaaggtgatgctggatacagcctcccttctgcgccacagactaagagcagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaggccagcaaggtgatgctggatacagcctcccttctgcgccacagactaagagcagag 379

                                                                       
Query: 361 cagcccagagagcccctcctccttaccctggaagccccgccaagaagctggtgaccccac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cagcccagagagcccctcctccttaccctggaagccccgccaagaagctggtgaccccac 319

                                                                       
Query: 421 tgttataatttgaataagatatgtcctccacctcccccggctcacttgtctccagctggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgttataatttgaataagatatgtcctccacctcccccggctcacttgtctccagctggt 259

                                                                     
Query: 481 gggaatcttgtgaggtctgggggtgtctacaggccctttacaagatgggactttgttg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gggaatcttgtgaggtctgggggtgtctacaggccctttacaagatgggactttgttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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