BAC Information

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BAC

Clone NameMSMg01-079D08
Chromosome7 (Build37)
Map Location 16,067,334 - 16,067,638
singlet/doubletsinglet
Overlap geneEG545921
Upstream geneEG638251, B430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758
Downstream geneLOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079D08.T7 (MSMg01no079_d08.b1)MSMg01-079D08.TJ (MSMg01no079_d08.g1)
ACCAG300346AG300347
length715712
length of high quality
(start - end)
493 (41 - 533)401 (69 - 469)
definitionCHROMAT_FILE: MSMg01no079_d08.b1 PHD_FILE: MSMg01no079_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:46 2005CHROMAT_FILE: MSMg01no079_d08.g1 PHD_FILE: MSMg01no079_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:46 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTC
ATTGCACACTTTCTGCAATTATATGGAAACCAACAGCCAGCATAAAATTA
AATATCCCCATTAAAAAGTGGCCCTCAGAGCTGAACAAAGAATTCTCACC
TGAGAAATATCGAATGGCAGAGAAGCACCTGAGAAAATGTTCAAAATCCT
TAATCATCAGGGAAATGCAAAATAAAACAACCCTGAGATTCCACCTCACA
CCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCG
AGGATGTGGAGAAAGAGGAACACTCCTCAATTGTTGGTGGGATTACAAGC
TTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGAC
ATAGTACTACTGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGA
AGATGTCCCAACCAGTAAGAAGGACATATGCTCCACAATGTTCATAGCAG
CCTTACTTATAATAGTCAGAAGCTGGAAAGAACCCAGACGCCCCTCATGA
GAGGAATGGATACAAAAAATGCGGTACATTTACACAATCGGGTACTACTC
ATCTATTAAAAAGAATGACTTTATGAAATTCCTAGGCATATGGATGGACC
TGTAGGGCATCATCCAGAGTGAGGTAACCCAATCACTAAGGAACTCGCAC
AATATGTACTCACTG
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGGCATGTGATTAGTCTGTTGGTGTCAGTTG
CCAGGTGTGAGCACAATGCCTGGGATTACTACAGGCTGTGTTTGTTCAGG
GGTGGGTTGCAGACAAGCTGGTTATCAGTTGTTTTGTGTGCAGTTGAACT
TCTGAGATGTCTTTAGGCTGTGGTGTCTTCAGTAGAGCAGACAAGATGGT
GAGCAGTTACCTTGCATGCACAGGAACTCTTGGGATGCCTTCAGGCTGTG
TTTTTTCACGGAAGGGGCAGACTAGCTGGTGGTCTGCCTTAGTAGAAGTT
GCCAGGCAGAAGGGCAGGATCTAGGACATTTAATCATAGGGGGATAACAT
CCAATTGCCAGCCCATCTGGACTGAATATCTCTTATTAATACTGGTGCTA
AATGCATATTTATTGTAATACTGAAAATACTTTTAAGATTGGGAAATAGA
TGTAGTTGTTCAGAAAGAATGAGGGTCCTGATGGATTCCTGCTCTAAAAT
GTTCACAACATATGCCTGGATAGGTGTGATGGGTAAATGGGTGCTCTCTT
GAGCTTTTCCATTGTGTTTCCTTTTACCAGGTTCTCCCGTACCGGGCCAT
ACCTCCATAAGTTCATAACACACACCCTTGCTCGATGGCCCTTCTTTGCT
TCTCTAATTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_d08.g1 MSMg01no079_d08.g1 CHROMAT_FILE:
MSMg01no079_d08.g1 PHD_FILE: MSMg01no079_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:46 2005
         (401 letters)



>mm_chr7_16066838_16067638
          Length = 801

 Score =  476 bits (246), Expect = e-138
 Identities = 293/314 (93%), Gaps = 9/314 (2%)
 Strand = Plus / Minus

                                                                       
Query: 88  gttgcagacaagctggttatcagttgttttgtgtgcagttgaacttctgagatgtcttta 147
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gttgcagatgagctggttatcagttgttttgtgtgcagttgaacttctgagatgtcttta 742

                                                                       
Query: 148 ggctgtggtgtcttcagtagagcagacaagatggtgagcagttaccttgcatgcacagga 207
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 741 ggctgtggtgtcttcagtagagcagacaagatggtgagcagttacccagcatgcacagga 682

                                                                       
Query: 208 actcttgggatgccttcaggctgtgttttttcacggaaggggcagactagctggtggtct 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 actcttgggatgccttcaggctgtgttttttcacggaaggggcagactagctggtagtct 622

                                                                       
Query: 268 gccttagtagaagttgccaggcagaagggcaggatctaggacatttaatcatagggggat 327
           ||| ||| ||||||         ||| ||||||||||||||||||||| |||||||||| 
Sbjct: 621 gccgtagcagaagt---------gaatggcaggatctaggacatttaaacatagggggag 571

                                                                       
Query: 328 aacatccaattgccagcccatctggactgaatatctcttattaatactggtgctaaatgc 387
           ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 570 aacatccaattgccagcccatctcgactgaacatctcttattaatactggtgctaaatgc 511

                         
Query: 388 atatttattgtaat 401
           ||||||||||||||
Sbjct: 510 atatttattgtaat 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)