BAC Information

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BAC

Clone NameMSMg01-079K12
Chromosome7 (Build37)
Map Location 137,279,674 - 137,401,146
singlet/doubletdoublet
Overlap geneFgfr2
Upstream geneLOC100043144, Ppapdc1a, Brwd2, LOC100043150
Downstream geneLOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2, LOC619876, Btbd16, EG434249, Plekha1, Htra1, Dmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079K12.T7 (MSMg01no079_k12.b1)MSMg01-079K12.TJ (MSMg01no079_k12.g1)
ACCAG300685AG300686
length701701
length of high quality
(start - end)
246 (62 - 307)512 (68 - 579)
definitionCHROMAT_FILE: MSMg01no079_k12.b1 PHD_FILE: MSMg01no079_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:20 2005CHROMAT_FILE: MSMg01no079_k12.g1 PHD_FILE: MSMg01no079_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,279,674 - 137,279,913)(137,400,635 - 137,401,146)
sequence
ATTTGCGGCGCTAAACGACTCACATCGGTATCGGAGCCGCGGAATTCCTA
ATTTCAGAAACACATACACACACACACACACACACACACACACACGTAGC
CTGGACAAGAACAACTGGGGCACCCTCTAGATCCTCACTGAGAATATAAG
AAGCCATGGGAAGTGACATCCATTGTTCTTGTTTCATCTTGGCCTAGACC
CCAGCCCTGTGCTGCTGCTGAAGATGGGCAAAGCAATATGCCCTCATTGA
ACAAAGCCATCTATCATTCAAGAGTCCTCTAGAAATTAGTCACACCCCCA
GGAAGTTATTCTTCAACCCTAGCTTTCACCACGGCAGCCCCTGGGATGCT
AAGGTTGATGGGAGAAATACTGTGTGTCAGGAGAATGGTGTGTAAGTGGA
ACCAGGTTTCAGAGTGGAACAGTTTGCAGTGTGGCGGCCCACTCAGAACA
CTGGTCTGGAAGCTTGCATTGACCCTCAAGCCACACAGGATCCCTGATCA
TGCATGACCCAGCTTGACCTTAGCCTTGGGGGTTTCATTTTATTTTATTT
TTTTATTTTTATTTATTTTTTTTAGTATAATGTTTTCCAGGACCTTTTGT
TTCATTTTGCTTTTTATCCACAGGGGGGAAAAATGATTAAACAATACCAA
GTTCCCCTTTAGTAGCATTTGGGCTAAGCTCCTCCCCACAGATACCTGTC
A
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAACAACCAAGCATTCCAATATGAGATGTTTCCA
ATATCTGATTTAATGAATAATCACATGGTTATGAAATAACTGGGGTAGTG
TTTAAACAGGAAGGGGATGTTTAATGTTCGCATTCTCTGTGGAGTGCGTG
CAGTAGCCCCGTGCCTGCAGTAGCCCTGTGCCACACTTATAGACAGTTTG
GCTACTTACATAGTTAGGGTGGTCATGAAAAGACAACTAAGTCCCTTTCA
TCAGGCTCCGTCTTAACTTTTCCATTTCTGATTGAATCCCTGGGATCGAT
CCAGCAGGGTGTCTTGTCTTGGTCAGCAGCTAGGAGTTATTTTGGGGGAA
GGGATGCTGCAGGCTATTTTACAGATAATGATGGGTTTCCTGTGCAGAAC
TGTCCCTGTAGGGGCTGGAGCAAGTGATGATTCTGTGATTAAGAGCACTT
CCTCCTTTTGCAGAGGACCAGTGTTGGGTCCCCAACACCCACAGGGAAGT
GCTCCTGACTGTCTTTATCTCCAGGTGCTGGGGCCCAGCGCCTCTGACCT
ACTGTTGCCTGCAGGTGCCCTTCTCATGTTGGCTGCCCTTGCCCTTACTG
TCTTTGTGCCTTCGTATAGAACGATGGTAAAAAAATCCATGATGGTATTC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_k12.b1 MSMg01no079_k12.b1 CHROMAT_FILE:
MSMg01no079_k12.b1 PHD_FILE: MSMg01no079_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:20 2005
         (246 letters)



>mm_chr7_137279470_137280115
          Length = 646

 Score =  418 bits (216), Expect = e-121
 Identities = 234/240 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   acacacacacacacacacacacacacacacgtagcctggacaagaacaactggggcaccc 64
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 205 acacacacacacacacacacacacacacacgtagcctggacaagaagagctggggcaccc 264

                                                                       
Query: 65  tctagatcctcactgagaatataagaagccatgggaagtgacatccattgttcttgtttc 124
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 265 tctagatcctcactgagaatataagaagccacgggaagtgacatccattgttcttgtttc 324

                                                                       
Query: 125 atcttggcctagaccccagccctgtgctgctgctgaagatgggcaaagcaatatgccctc 184
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcttggcctagaccccagccccgtgctgctgctgaagatgggcaaagcaatatgccctc 384

                                                                       
Query: 185 attgaacaaagccatctatcattcaagagtcctctagaaattagtcacacccccaggaag 244
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attgaacaaagccaactgtcattcaagagtcctctagaaattagtcacacccccaggaag 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no079_k12.g1 MSMg01no079_k12.g1 CHROMAT_FILE:
MSMg01no079_k12.g1 PHD_FILE: MSMg01no079_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:20 2005
         (512 letters)



>mm_chr7_137400554_137401465
          Length = 912

 Score =  959 bits (496), Expect = 0.0
 Identities = 508/512 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaaccaagcattccaatatgagatgtttccaatatctgatttaatgaataatcacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aacaaccaagcattccaatatgagatgtttccaatatctgatttaatgaataatcacatg 534

                                                                       
Query: 61  gttatgaaataactggggtagtgtttaaacaggaaggggatgtttaatgttcgcattctc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 533 gttatgaaataactggggtagtgtttaaacaggaaggggatgtttaatgttcacattctc 474

                                                                       
Query: 121 tgtggagtgcgtgcagtagccccgtgcctgcagtagccctgtgccacacttatagacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgtggagtgcgtgcagtagccccgtgcctgcagtagccctgtgccacacttatagacagt 414

                                                                       
Query: 181 ttggctacttacatagttagggtggtcatgaaaagacaactaagtccctttcatcaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttggctacttacatagttagggtggtcatgaaaagacaactaagtccctttcatcaggct 354

                                                                       
Query: 241 ccgtcttaacttttccatttctgattgaatccctgggatcgatccagcagggtgtcttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ccgtcttaacttttccatttctgattgaatccctgggatcgatccagcagggtgtcttgt 294

                                                                       
Query: 301 cttggtcagcagctaggagttattttgggggaagggatgctgcaggctattttacagata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cttggtcagcagctaggagttattttgggggaagggatgctgcaggctattttacagata 234

                                                                       
Query: 361 atgatgggtttcctgtgcagaactgtccctgtaggggctggagcaagtgatgattctgtg 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 attatgggtttcctgtgcagaactgtccctgtaggggctggagcaagtgatgattctgtg 174

                                                                       
Query: 421 attaagagcacttcctccttttgcagaggaccagtgttgggtccccaacacccacaggga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 attaagagcacttcctccttttgcagaggaccagtgttgggtccccaacacccacaggga 114

                                           
Query: 481 agtgctcctgactgtctttatctccaggtgct 512
           ||| ||||||| ||||||||||||||||||||
Sbjct: 113 agtactcctgattgtctttatctccaggtgct 82


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)