BAC Information

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BAC

Clone NameMSMg01-080F11
Chromosome7 (Build37)
Map Location 56,072,329 - 56,072,514
singlet/doubletsinglet
Overlap geneZdhhc13
Upstream geneMrgpra18-ps, EG435978, Mrgprc2-ps, Mrgpra4, Mrgprx1, Mrgprb7-ps, Mrgprb12-ps, EG270335, Mrgprb5, Mrgprb4, Mrgprb13, Mrgprb8, Mrgprb1, Mrgprx2, Mrgprb2, Mrgprb9-ps, Mrgprb3, EG639116
Downstream geneCsrp3, E2f8, LOC100040465, 9130015G15Rik, 5330421F07Rik, Dbx1, Htatip2, Prmt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080F11.T7 (MSMg01no080_f11.b1)MSMg01-080F11.TJ (MSMg01no080_f11.g1)
ACCAG301208AG301209
length712699
length of high quality
(start - end)
234 (64 - 297)186 (77 - 262)
definitionCHROMAT_FILE: MSMg01no080_f11.b1 PHD_FILE: MSMg01no080_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:13 2005CHROMAT_FILE: MSMg01no080_f11.g1 PHD_FILE: MSMg01no080_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAATT
CCATCTCTACCAGACTTCCCCTATCTCAGCAATGAGAGTCCCGTGTCTAC
ACAGACCTCTCCAGTCTCACCAGTGAGAGTCCCCGGATCTACACAGACCT
CCCCAGTCTCAGCAGTGAGAGTCCCGTGTCTACACAGATCTCCATAATCT
CAGCAATGAGAATTCCATCTCTACACAGACTTCCCCAATCTCAGTAATGA
GAGTCCCTTGTCTACACAGACCTCTCCAGTCTCAGCAGTGAGAGTCCCCG
TATCTACTCTGATTTCTCCAGTCTCAGCAGTGAGAGTCCCATGTCTACAT
AGACCTCTCCAGCCTCAACATTGAGAGACCCGTGTCTACACAGACCTCTC
CAGTCTCACCCCCGAGAGTCTTGAGTCCTCAGAGCCCTCTTGACCCTGGG
TAAGGAGCGAAGAATGATCATTCTATAGGACATCGTCATGTCTAAGGATC
CCTAACATTGCTCCACGACGCTTAGATTCGGCACAAGATTGAGCTTATAT
GTCCCACCGTCTCGTGAGTCATCCTGCCCTCTGTTCCCATCACCCTGAAA
CCATGTTTCACCCGTGTACTCCACTGTTCCCAGGACTTATTTATGCCTTT
CAATTGCCCTTGCAACTCCACTGCTTTGCCCCCCATTTTTAACGTTTTGC
CTCGCTATACGT
GAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAGTGAGGCTCATTCCTGTCA
CGTACAGAAATGCCTATTATTAAGGCCTTCCAGAGCTTCTCAGTGACTGA
ATCATCTATTTGGGATTATTTGTGCCCATCTTCTATGACGTAACATTAAA
GTTTTGCTATGATCTGTTGCTGCCAAGACCATTTTTGCTTATGCCTCTCT
TAATTGCCCTCAGATAAGGAAGCCTTTAAGATCTCTCCATTGCCACGTGT
GCAACTCCTGTGTGGCTCGCTTCGATCATCACTGCTTTTGGACTGAACGC
TGCTTACGTGACACACTTACCTTTTTACTTACCCTCTGTGGTGAAGTCAA
TCACGTGCACTCATTAATGTGGTGCTTATACAACTATACACCCGCCCAAG
GTCTCCATTCTGTAGCTCTTCAAGAATCTTTATTACAAATCCTTGCAAAG
TATCTACCCTTGTTAATGATTGTTATCGCCCGCCGTGCACTTCATTGCAT
ATCTTGCCATATTTTCCTGTGTGGTCTCTGACCTCGTTCTTTATGCCTCC
TCTTCCCAATTTCGTTTTTCCGCCTGTTTTTTCCACCCTTTTTCTATCTG
ATTCACCCCCATTCTTCTTATATTAATTCTTCCCCCCCCTTCTTTCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_f11.g1 MSMg01no080_f11.g1 CHROMAT_FILE:
MSMg01no080_f11.g1 PHD_FILE: MSMg01no080_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:13 2005
         (186 letters)



>mm_chr7_56072129_56072714
          Length = 586

 Score =  329 bits (170), Expect = 7e-95
 Identities = 182/186 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttagtgaggctcattcctgtcacgtacagaaatgcctattattaaggccttccagagc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tcttagtgaggctcattcctgtcacgtacagaaatgcctattagtaaggccttccagagc 260

                                                                       
Query: 61  ttctcagtgactgaatcatctatttgggattatttgtgcccatcttctatgacgtaacat 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ttcgcagtgactgaatcatctatttgggattatttgtgcccatcttctatgacgtaagat 320

                                                                       
Query: 121 taaagttttgctatgatctgttgctgccaagaccatttttgcttatgcctctcttaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 taaagttttgctatgatctgttgctgccaagaccatttttgcttaggcctctcttaattg 380

                 
Query: 181 ccctca 186
           ||||||
Sbjct: 381 ccctca 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)