BAC Information

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BAC

Clone NameMSMg01-080I04
Chromosome7 (Build37)
Map Location 86,332,571 - 86,464,772
singlet/doubletdoublet
Overlap geneAbhd2
Upstream geneNtrk3, Mrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8
Downstream geneRlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080I04.T7 (MSMg01no080_i04.b1)MSMg01-080I04.TJ (MSMg01no080_i04.g1)
ACCAG301329AG301330
length693700
length of high quality
(start - end)		545 (39 - 583)387 (71 - 457)
definitionCHROMAT_FILE: MSMg01no080_i04.b1 PHD_FILE: MSMg01no080_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:26 2005CHROMAT_FILE: MSMg01no080_i04.g1 PHD_FILE: MSMg01no080_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,332,571 - 86,333,109)(86,464,417 - 86,464,772)
sequence
CATAATTTGCGGCGCTAAACGACTCCTATTTCCAGAGATCCGCGGAATTC
TACATCCGATCCACAGACAATAGGAAGAGAGAGATCTGGGCTTGAAATTG
ACTTTTTGAAACCTCAAAGCCCATCCCCCAGTGACATACTTCCTCCAACA
AGGCCACACCTCCTAATACTTTCAAATAGTACCACTCCCTAGTGGCCAAG
TATCCAAACTATGAGCCTATACAGTCTATTCTCATTCAAAGCACCACATT
CCCCACAAGGTTCTATTGGAGGAAAACAGATGACTGATGCTGAACTTACA
TTGGCCAGTGAAAAATGTCTAATGTCTTCCACCATCCAATGGCCTTACAT
CTTGTAATGGACAAATGACAAAAATAAGTCTTGCTAACACACCTATGACA
AAGCCTGCTGCGCTGGCTAGTCTCATGTCTACTTGACAGACAAACTAGTT
ACCTGAAAGGAGGGAGTCTCAATTGAGAAAATGACTCCATGTCATCCAAC
TATAGGGCATTTTCTCAATTCCTGATAATCAATAGGGGAGGACCCTGACC
ATGGTAAGTGGTTCCATCCCTGGGATGGTGGGTTCTTTAAGAAAGCAGGC
TGAGTATGCTATGAGAAGTAAGCCAGTAAGTAGCAACCATTCATGGCCTC
TGCATCTGCTCCTGCCTCCAGGTTCCTGTCATGCTTGAGTTCC

ATGCAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGCTTACGTTGTTTATTTTCTATTATATTT
TTACTCTTTTCCCCGTTAATTTGTATTTTTATTAGCGCTATAGTATTAAA
CATTATCATTTGTATGTTAGGATTGTTTTCTTATTAATTATATTATTGTA
TGTTTAAGTTCACATTTTTCATTGGCTTTTGAGACAGGGTCTCAATATAT
AGCCCAGGCTGGCCCTGATCTGGCAATTCTCCTGCTTCAGTCTCTTGAGT
GCTAGGACTACAGGTGTATATCCTGCTCAGGAAAGTTTAATTTGATTTTT
ACATATTTTTAAAAATATTTTTGTGGCTAAATTTGTTAGATCTTAGAAAT
CTCCCCCTCCTTCTAACTTGATTCTGTTTTTAAGATTTTAAGACAGTGTC
TTGTGTATCCCTGTTTGCCCTGTAACTCACTCTGTACACCAGTTTGACCT
TGACCTCTGAATCCTGCCTGTCTCTGTCTTCCAAGTGCTGAGATTAGAGG
TGTGCACCACCATCGCTCAGCTTTGCTTGCTGCCCCTAATAACACTGATT
ACTTCACCCTTTTTTTTCTTTCCCCCCCCTTTTCCTTCTTTTTCCTTCCT
TTTCCCTCCCCTTAGTATTCCCCTCCCCCCCCTTATGCCCCTTTTCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_i04.b1 MSMg01no080_i04.b1 CHROMAT_FILE:
MSMg01no080_i04.b1 PHD_FILE: MSMg01no080_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:26 2005
         (545 letters)



>mm_chr7_86332365_86333309
          Length = 945

 Score =  980 bits (507), Expect = 0.0
 Identities = 531/539 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctacatccgatccacagacaataggaagagagagatctgggcttgaaattgactt 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctacatccgatccacagacaataggaagagagagatctgggcttgaaattgactt 266

                                                                       
Query: 67  tttgaaacctcaaagcccatcccccagtgacatacttcctccaacaaggccacacctcct 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tttgaaacctcaaagcccatcccccagtgacatacttcctccaacaaggccacacctcct 326

                                                                       
Query: 127 aatactttcaaatagtaccactccctagtggccaagtatccaaactatgagcctatacag 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aatactttcaaatagtaccactccctagtggccaagtatccaaactatgagcctatacag 386

                                                                       
Query: 187 tctattctcattcaaagcaccacattccccacaaggttctattggaggaaaacagatgac 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tctattctcattcaaagcaccacattccccacaaggttctattggaggaaaacagatgac 446

                                                                       
Query: 247 tgatgctgaacttacattggccagtgaaaaatgtctaatgtcttccaccatccaatggcc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgatgctgaacttacattggccagtgaaaaatgtctaatgtcttccaccatccaatggcc 506

                                                                       
Query: 307 ttacatcttgtaatggacaaatgacaaaaataagtcttgctaacacacctatgacaaagc 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttacatcttgtaatggacaaatgacaaaaataagtcttgctaacacacctatgacaaagc 566

                                                                       
Query: 367 ctgctgcgctggctagtctcatgtctacttgacagacaaactagttacctgaaaggaggg 426
           |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 567 ctgctgtgctggctagtctcatgtctacttgacagacaaactagttatctgaaaggaggg 626

                                                                       
Query: 427 agtctcaattgagaaaatgactccatgtcatccaactatagggcattttctcaattcctg 486
           || |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 627 agcctcaattgagaaaatgactccatgttgtccaactatagggcattttctcaattcctg 686

                                                                      
Query: 487 ataatcaataggggaggaccctgaccatggtaagtggttccatccctgggatggtgggt 545
           || |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 687 atgatcaataggggaggaccctgcccatggtaagtggttccatccctgggctggtgggt 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no080_i04.g1 MSMg01no080_i04.g1 CHROMAT_FILE:
MSMg01no080_i04.g1 PHD_FILE: MSMg01no080_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:26 2005
         (387 letters)



>mm_chr7_86464417_86465203
          Length = 787

 Score =  673 bits (348), Expect = 0.0
 Identities = 354/356 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcttacgttgtttattttctattatatttttactcttttccccgttaatttgtattttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tgcttacgttgtttattttctattatatttttactcttttccccgttaatttgtattttt 297

                                                                       
Query: 61  attagcgctatagtattaaacattatcatttgtatgttaggattgttttcttattaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 attagcgctatagtattaaacattatcatttgtatgttaggattgttttcttattaatta 237

                                                                       
Query: 121 tattattgtatgtttaagttcacatttttcattggcttttgagacagggtctcaatatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tattattgtatgtttaagttcacatttttcattggcttttgagacagggtctcaatatat 177

                                                                       
Query: 181 agcccaggctggccctgatctggcaattctcctgcttcagtctcttgagtgctaggacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 agcccaggctggccctgatctggcaattctcctgcttcagtctcttgagtgctaggacta 117

                                                                       
Query: 241 caggtgtatatcctgctcaggaaagtttaatttgatttttacatatttttaaaaatattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 caggtgtatatcctgctcaggaaagtttaatttgatttttacatatttttaaaaatattt 57

                                                                   
Query: 301 ttgtggctaaatttgttagatcttagaaatctccccctccttctaacttgattctg 356
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 56  ttgtggttaaatttgtttgatcttagaaatctccccctccttctaacttgattctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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