BAC Information

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BAC

Clone NameMSMg01-080K16
Chromosome7 (Build37)
Map Location 16,246,431 - 16,246,769
singlet/doubletsinglet
Overlap genenone
Upstream geneEG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3
Downstream geneLOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080K16.T7 (MSMg01no080_k16.b1)MSMg01-080K16.TJ (MSMg01no080_k16.g1)
ACCAG301449AG301450
length706695
length of high quality
(start - end)
274 (39 - 312)338 (69 - 406)
definitionCHROMAT_FILE: MSMg01no080_k16.b1 PHD_FILE: MSMg01no080_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:39 2005CHROMAT_FILE: MSMg01no080_k16.g1 PHD_FILE: MSMg01no080_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:39 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGATCCGCGGAATTCT
TCAAGATCCGCTGTTATATCTCCCTTTTCATTTCTGATTTTCTTAATTAG
GATGTTGTCCCTGTGCCCTCTAGTGAGTCTAGCTAAGGGTTTATCTATCT
AGTTTCTTTTTGGAGGCACTCAGAGCTATGAGTTTCCCTCTAAGAAATGT
GTCCCATAGGTTTGGATATGTTGTGGCTTCATTTTCATTAAACTCTAAAA
AGTCTTTAATTTCTTTCTTTATTCCTTCCTTGATCAAGGTATCATTGAGA
AGAGTGTTGTTCATTTTCCACGTAAATGTTGGATTTCCATTATTTATGTT
GTTATTGAAGATCAGCCCTAGTCCTTGTTGATCTGATAGCATGCATGGTA
CTATTTCCCCCCCCTTTGTACATGTTGAGTCTTGTTTTGTGTTCCACTAT
ATGGTTAATTTTGTGAGCAGGTTCTTATGGTCTGCTCGACACTAATGCCC
ACCCTTTTGTTTTATTATAATATGTTCTGTATCCATTCGTTCCCCCCATT
TGTTTTCTTTCCTCTTTTTTTTTTTTTGTCCCTTTGTCCCGTCCTTGCCC
TTTTTTTTCCGCTTTTTTTTTTTTCCCTTTCTGCTTTCCCCCCCCCTTTT
TTTTTCCCCCCTTTCCTTTTCCCCTTTTTCTTTTTTTTTTCTTTCCTCCC
TTTTTA
GATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTGGAGAGGTTTGTCAGAATATGGGGTTGGA
TATTTCTGTTGTTTTAGCTCTACCACTCCTGGACATATATCAAAGGGGTG
CTTATCCCTACTACAAGGTCACTTGATCAACAGTGTACATTGCTTCTCTA
TTCGTAATAGCCAGTAATTAGAAATAGCCTAGGTGTCTGCTGGGGACAGC
ATACAAGGACATGTACTGCCTGTGGTAGGCCAGGATGGAGATATTTCAGT
AGATGTAAAAAATATTAAAGTATTCCCATTTCTCCTAACCTTAGGACCAG
ACAAGGGACACATAGATTTCTTTTGTGCATAACTGCTTTTCAGTTGGCCT
TGGAGCCCCCACTTATTCTATTATGTCTGAATTTCTTATTTTTTAATTAG
TCATTTTCTTTTATTTAACATTTTTATTAAGCATTTTCCCCATTTACTTT
TCCAATCGTATCCCACAATTCCCCCATACCTTCCCCTCCCCCAATCACCT
ACCATCCCATTCCCATTTTTTTTGGCCTGGTGTTCCCCTGTACTGCTGCC
TATATTGGTCGGTTGTTTTTTGTCCCCCTCCTTAAAGTGATTGCCTTTTA
TTGCCCCCCCTTATTTTCCTCCCGCCCCTTTTTCCCCTTTGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_k16.g1 MSMg01no080_k16.g1 CHROMAT_FILE:
MSMg01no080_k16.g1 PHD_FILE: MSMg01no080_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:39 2005
         (338 letters)



>mm_chr7_16246231_16246970
          Length = 740

 Score =  373 bits (193), Expect = e-108
 Identities = 305/345 (88%), Gaps = 14/345 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggagaggtttgtcagaatatggggttggatatttctgttgttttagctctaccactc 60
           ||||||| |||||||||||||||||| |||||| ||||| ||| ||||||| ||||||||
Sbjct: 201 agtggagtggtttgtcagaatatgggattggatctttctcttgatttagctgtaccactc 260

                                                                       
Query: 61  ctggacatatatcaaaggggtgcttatccctactacaaggtcacttgatcaacagtgtac 120
           |||| |||||||||||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct: 261 ctgggcatatatcaaaggggtgcttttccccaccacaaggtcacttgatcaacagtgtac 320

                                                                       
Query: 121 attgcttctctattcgtaatagccagta-attagaaatagcctaggtgtctgctggggac 179
           |||||| |||||||| |||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 321 attgctgctctattcataatagccag-agattagaaatagcctaggtgtctgctggggac 379

                                                                       
Query: 180 agcatacaaggacat--gtactgcctgtggtaggccaggatggagatatttcagtag-at 236
           |||||||||| | ||  | ||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 380 agcatacaag-a-atagggactgcctgtagtaggccaggatggagatatttcagtagcat 437

                                                                       
Query: 237 gtaaaaaatattaaa---gtattcccatttctcctaaccttagg-accagacaagggaca 292
           |||||||| |  |||   || ||||||||||||||||| ||||| || |||||| || ||
Sbjct: 438 gtaaaaaaaa--aaaaaagtgttcccatttctcctaactttaggcac-agacaacggtca 494

                                                        
Query: 293 catagatttcttttgtgcataactgcttttcagttggccttggag 337
            |||| |||| ||||||||| ||||||||||| || || ||||||
Sbjct: 495 tataggtttcatttgtgcatgactgcttttcatttcgcattggag 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 740
Length adjustment: 9
Effective length of query: 329
Effective length of database: 731
Effective search space:   240499
Effective search space used:   240499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)