BAC Information

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BAC

Clone NameMSMg01-081I15
Chromosome7 (Build37)
Map Location 104,261,614 - 104,262,108
singlet/doubletsinglet
Overlap geneGab2
Upstream geneEG666836, Odz4, LOC670727, LOC666858, Nars2
Downstream geneLOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081I15.T7 (MSMg01no081_i15.b1)MSMg01-081I15.TJ (MSMg01no081_i15.g1)
ACCAG302118AG302119
length702699
length of high quality
(start - end)
385 (56 - 440)471 (65 - 535)
definitionCHROMAT_FILE: MSMg01no081_i15.b1 PHD_FILE: MSMg01no081_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:46 2005CHROMAT_FILE: MSMg01no081_i15.g1 PHD_FILE: MSMg01no081_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCCGCTATACGATCACTATCGAAGAGGACCGCGGAATTCAACTTA
TTCCAACTGTGTGTGCATCTACATATTAGTGTATTTTCTTGGACTCACAC
TTCAGTGAGTGACTGTACTTATCTCTTTACCAATGCAGTATCCTATAGGT
TACCAGAGTTTGGCAGGAAGTCTTGAAACCAGGTAGTTTAAATGCTTCAT
TGTTGTCCTTTTAGAAGATTAATATGGAGTGTTTAAATTTTTTTCATTTT
TACACATATTTTAGAACCAATCTAACAGTATCTATATAAAAGCTTGTTAG
AAGTTTTATTGTAGTGAACCTATAGATCATTCTGAAGAACTGTCATTTTA
CTAATATTTGAGTTTCTAATTCATAACTATAGTATGTTTCTTTTCTTATT
TAGGCCTCTCATTTCTCTCACTAATGTCTTCACAATTCAGAACACAAGAA
ACAAAAAAAAGTAAGGCTATCGTGTTCCTCCAAATCATAATTCTTTAATT
ACCAAGACCAAAGAGTCAAATGGGTAAAATGCCAGATGAAGAATACCCAC
ATTTTCCTGTAAAAATAGCCAGTGACTTCAAAATGATACACCTAAGCTTA
TGCATGAAGTAAGGAAATCACTTTCAGATCTTGAGACTTATCAGGAACTA
TTGACTGCGACACGAATGTTACCTGATTATACATATACAGCCAGTATCTA
GT
GTGGGTAGCCTGGTGCCGCCTGTCAAACAAXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATAGCTGTTTGGTCTACAAGGCTAGATGTCTCAGATG
GTCTTTGATAGACACCAGAGTCCTGAAGGAGTGTCTGTGTTGCCAATGAA
GGAATGAACTTGCCAACAAACAAGGACAAACATAGCTTCCCTATTGTATG
TTCTTTATATAACTTTATATTATATATATATATCTTGTATGTTCTTTATA
TAAGCTTCTTTGAGAAAGTGTGGCCTAGTTTAGTGGGTCTTCCCATATTG
AATAATCCAGTTAATAGAATACCTTAGGGTATACCCAGAAGCTTACATTT
TGGCTAATTCCACATATGGTCAAGTTGACAAACAAGAATAACCACCATAG
CTATTATGGGACACTGTCCAAATTAGGACCTGATGTTAGAATCTAGCCTC
AATTGTAGTTTATAAAACTCAAGATTTTTTATTTTATCAGTGGGCATATT
CAAAACTATATCTCTAAATGTTAAACTCTTTAGTAATTACTGATCTGACT
ATGGATCTGTTAGCAGTGTAACAATATATTTGTTATACTGTTAAGTGACT
TTTTATATTAGATATCTTACAAGTAATTCTTCCCTGAAGAAAACTTATTT
CAAGAGGAAAATAGTCTCAGTCTTAGCTTTCAAAATTCCCATAAAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_i15.g1 MSMg01no081_i15.g1 CHROMAT_FILE:
MSMg01no081_i15.g1 PHD_FILE: MSMg01no081_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:46 2005
         (471 letters)



>mm_chr7_104261438_104262308
          Length = 871

 Score =  822 bits (425), Expect = 0.0
 Identities = 465/495 (93%), Gaps = 27/495 (5%)
 Strand = Plus / Plus

                                                                       
Query: 4   ctgtttggtctacaaggctagatgtctcagatggtctttgatagacaccagagtcctgaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ctgtttggtctacaaggctagatgtctcagatggtctttgatagacaccagagtcctgaa 236

                                                                       
Query: 64  ggagtgtctgtgttgccaatgaaggaatgaacttgccaacaaacaaggacaaacatagct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ggagtgtctgtgttgccaatgaaggaatgaacttgccaacaaacaaggacaaacatagct 296

                                                                       
Query: 124 tccctattgtatgttctttatataactttatat------------tatatatatata--- 168
           |||||||||||||||||||||||||||||||||            ||||||||||||   
Sbjct: 297 tccctattgtatgttctttatataactttatatataaagatataatatatatatatagat 356

                                                                       
Query: 169 ------------tcttgtatgttctttatataagcttctttgagaaagtgtggcctagtt 216
                       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ataatatatatatcttgtatgttctttatataagcttctttgagaaagtgtggcctagtt 416

                                                                       
Query: 217 tagtgggtcttcccatattgaataatccagttaatagaataccttagggtatacccagaa 276
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tagtgggtcttcccatattgaataatccagttaatagaataccttagggtatacccagaa 476

                                                                       
Query: 277 gcttacattttggctaattccacatatggtcaagttgacaaacaagaataaccaccatag 336
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 477 gcttacattttggctaattccagatatggtcaagttgacaaacaagaataaccaccatag 536

                                                                       
Query: 337 ctattatgggacactgtccaaattaggacctgatgttagaatctagcctcaattgtagtt 396
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttattatgggacactgtccaaattaggacctgatgttagaatctagcctcaattgtagtt 596

                                                                       
Query: 397 tataaaactcaagattttttattttatcagtgggcatattcaaaactatatctctaaatg 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tataaaactcaagattttttattttatcagtgggcatattcaaaactatatctctaaatg 656

                          
Query: 457 ttaaactctttagta 471
           |||| ||||||||||
Sbjct: 657 ttaagctctttagta 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)