BAC Information

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BAC

Clone NameMSMg01-081L17
Chromosome7 (Build37)
Map Location 37,548,378 - 37,548,816
singlet/doubletsinglet
Overlap geneTshz3
Upstream genezfp507, LOC100043872, EG668988, LOC668507
Downstream geneLOC100043874, Zfp536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081L17.T7 (MSMg01no081_l17.b1)MSMg01-081L17.TJ (MSMg01no081_l17.g1)
ACCAG302266AG302267
length720718
length of high quality
(start - end)
445 (45 - 489)377 (72 - 448)
definitionCHROMAT_FILE: MSMg01no081_l17.b1 PHD_FILE: MSMg01no081_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:02 2005CHROMAT_FILE: MSMg01no081_l17.g1 PHD_FILE: MSMg01no081_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGCATTCCCGTCTGGTTTTGCTCACAGTAGACCAGCATTCAACAC
TCACTGCCTCATGTGGGATGCTGTTAGCCTGAGGTCACTGGTGGCTGCAC
AGAATGGTATCAACAGCCCAGTAATAGGATTGGATTTGCCTCTGCCCCCT
CCCACCTCAGTTCAGTGCAGACACCAACATGTCTCCCTTCCCATTTCATA
CCCTTCAATCTAGTACAAACAGAAGCATTGAGACTGTTATCACCCGGCTG
ATTGCTAACATCACTTTCCTGGTATACGCCCTCAAGACTCTCCTCTTGCT
TCAGACAAATGCCCCATATCCTCAAAATATACCCAGCATCCACCCTCTTC
TGCTCCCATTTCCTTCCAGCTCCTCTGTGCCTCTAAAATGTGGCAGGATC
TCTCATACCCAACTCCCCACTACTCATTGCTGCCTCCCATTCTGGAAGCT
AGGAGCACATGCTGTGGGGTCCTCGCCTCAGGACTGCAGGTGGAAGCCCA
TTTCTGGTGTTGAGTGTGGTGGAGAGAGAAAGAAAGAACTTTTGCTCTTT
TTCTCTTTTCATTGAGCGCTATTGACTTTCNTTGCTTATAACCAGTGATT
TAGTACTCGTCTTTGTTTCGCGATAAATATATATAAAATATCAATTCATA
AAATTTCTATGTTAATGCAT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTGTGCAGGGCATGGTGGCCTGGGCTAT
AATTTCAGTGCTTGGGAGAATGGGGCAGGAAGATTGGGAACATTCCAGGA
CAGCCTGGGCTACATAATGAATCCCTGTCTCAAAAAAAAAAAAAAATCCA
ATGACGAGTCCCTGGTGAGTTGGTCCTCACCTTCAACTGATGTGACCCTT
GAAGACAGTTCCTCAGGTTGTGGTGAGACCCCCAACCATAACATTTCATT
GCTACTTCATTACTGTAATTTTGCTACCATTATGAATTGTAATGTAAATA
TCCAACAATCAGGATAGCTGATAGCTAGACCCCTGTGAAAAGGTCATTAA
ACTCCCCAAAGGGGTCTCGATTCACAGGTTGAGAACTCCTGTCATTGTCC
CAGCTAAGGCTGCAAACCCTGTTTTGAAATAGTAAGTAGAAGAGGTCTCA
CACTTGCAGTTCTGCGAGAGGGGTAAGGTTCTAGAAGCTGCGTGTTCAAT
GGTTTTCTTCTAAAGGATCCTTTTCCGAGGCCAGCTACCACGGTGCTAAT
GGTAACGTTTTGGCTGACCATGGTTGAACCGTCAGAAATTGGAAGCTTCG
TGACCCCCCGACCTCAGATTCGAATCTCCAAAAAATATTACGAGTGAAAA
ATATCTAGAAAATCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_l17.b1 MSMg01no081_l17.b1 CHROMAT_FILE:
MSMg01no081_l17.b1 PHD_FILE: MSMg01no081_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:02 2005
         (445 letters)



>mm_chr7_37548174_37549018
          Length = 845

 Score =  774 bits (400), Expect = 0.0
 Identities = 430/440 (97%), Gaps = 2/440 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgcattccc-gtctggttttgctcacagtagaccagcattcaacactcactgc 63
           ||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 643 gaattcttgca-tcccggtctggttttgctcacagtaggccagcattcaacactcactgc 585

                                                                       
Query: 64  ctcatgtgggatgctgttagcctgaggtcactggtggctgcacagaatggtatcaacagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ctcatgtgggatgctgttagcctgaggtcactggtggctgcacagaatggtatcaacagc 525

                                                                       
Query: 124 ccagtaataggattggatttgcctctgccccctcccacctcagttcagtgcagacaccaa 183
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 524 ccagtaataggattggatttgcctctgccccctcccacctcagcacagtgcagacaccaa 465

                                                                       
Query: 184 catgtctcccttcccatttcatacccttcaatctagtacaaacagaagcattgagactgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 catgtctcccttcccatttcatacccttcaatctagtacaaacagaagcattgagactgt 405

                                                                       
Query: 244 tatcacccggctgattgctaacatcactttcctggtatacgccctcaagactctcctctt 303
           ||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct: 404 tatcacccggctgattgctaacatcacttacctgggaaacgccctcaagactctcctctt 345

                                                                       
Query: 304 gcttcagacaaatgccccatatcctcaaaatatacccagcatccaccctcttctgctccc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gcttcagacaaatgccccatatcctcaaaatatacccagcatccaccctcttctgctccc 285

                                                                       
Query: 364 atttccttccagctcctctgtgcctctaaaatgtggcaggatctctcatacccaactccc 423
           |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 284 atttccttccagctcctctgggcctctaagatgtggcaggatctctcatacccaactccc 225

                               
Query: 424 cactactcattgctgcctcc 443
           ||||||||||||||||||||
Sbjct: 224 cactactcattgctgcctcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)