MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-082D04
Chromosome	7 (Build37)
Map Location	104,261,634 - 104,261,838
singlet/doublet	singlet
Overlap gene	Gab2
Upstream gene	EG666836, Odz4, LOC670727, LOC666858, Nars2
Downstream gene	LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a
Link	Open Mouse BAC browser

Click to get alignment info.

name	EG666836 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666836 MGI:3646693
definition	note : predicted gene, EG666836 pseudo : _no_value

name	Odz4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23966 MGI:2447063
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC670727 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:670727
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC666858 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666858
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Nars2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244141 MGI:2142075
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gab2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14389 MGI:1333854
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040457 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040457
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein

name	Usp35 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244144 MGI:2685339
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 1 Protein

name	EG622320 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:622320 MGI:3643121
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Alg8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381903 MGI:2141959
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ndufc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68197 MGI:1344370
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Thrsp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21835 MGI:109126
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kctd14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:233529 MGI:1289222
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ints4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:101861 MGI:1917164
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1810020D17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66273 MGI:1913523
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rsf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:233532 MGI:2682305
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC622994 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:622994
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 mRNAs, 861 ESTs pseudo : _no_value

name	LOC100040211 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040211
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Clns1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12729 MGI:109638
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aqp11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66333 MGI:1913583
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040594 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040594
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins pseudo : _no_value

name	Pak1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18479 MGI:1339975
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gdpd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:233537 MGI:3606573
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myo7a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17921 MGI:104510
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Odz4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803394 GeneID:23966 MGI:2447063
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : odd Oz/ten-m homolog 4 (Drosophila) transcript_id : NM_011858.3

name	LOC670727 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149257601 GeneID:670727
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical LOC670727 transcript_id : XM_001474199.1

name	Nars2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802200 GeneID:244141 MGI:2142075
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : asparaginyl-tRNA synthetase 2 (mitochondrial)(putative) transcript_id : NM_153591.3

name	Gab2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753931 GeneID:14389 MGI:1333854
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : growth factor receptor bound protein 2-associated protein 2 transcript_id : NM_010248.1

name	LOC100040457 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149257603 GeneID:100040457
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein product : hypothetical protein LOC100040457 transcript_id : XM_001474288.1

name	Usp35 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149257588 GeneID:244144 MGI:2685339
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 1 Protein product : ubiquitin specific peptidase 35, transcript variant 3 transcript_id : XM_886523.3

name	EG622320 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352170 GeneID:622320 MGI:3643121
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG622320 transcript_id : NM_001039039.2

name	Alg8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39841066 GeneID:381903 MGI:2141959
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase) transcript_id : NM_199035.1

name	Ndufc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:18859596 GeneID:68197 MGI:1344370
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2 transcript_id : NM_024220.1

name	Thrsp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560631 GeneID:21835 MGI:109126
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thyroid hormone responsive SPOT14 homolog (Rattus) transcript_id : NM_009381.2

name	Kctd14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131132 GeneID:233529 MGI:1289222
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium channel tetramerisation domain containing 14 transcript_id : NM_001012434.2

name	Kctd14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374260 GeneID:233529 MGI:1289222
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium channel tetramerisation domain containing 14 transcript_id : NM_001010826.2

name	Ints4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:30794413 GeneID:101861 MGI:1917164
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : integrator complex subunit 4 transcript_id : NM_027256.1

name	1810020D17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254392 GeneID:66273 MGI:1913523
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1810020D17 gene transcript_id : NM_183251.2

name	Rsf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486904 GeneID:233532 MGI:2682305
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : remodeling and spacing factor 1 transcript_id : NM_001081267.1

name	LOC100040211 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149257590 GeneID:100040211
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040211 transcript_id : XM_001474280.1

name	Clns1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19263323 GeneID:12729 MGI:109638
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chloride channel, nucleotide-sensitive, 1A transcript_id : NM_023671.1

name	Aqp11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384133 GeneID:66333 MGI:1913583
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aquaporin 11 transcript_id : NM_175105.3

name	Pak1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112181193 GeneID:18479 MGI:1339975
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : p21 (CDKN1A)-activated kinase 1 transcript_id : NM_011035.2

name	Gdpd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31343271 GeneID:233537 MGI:3606573
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycerophosphodiester phosphodiesterase domain containing 4 transcript_id : NM_177696.2

name	Myo7a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115511009 GeneID:17921 MGI:104510
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myosin VIIa transcript_id : NM_008663.2

name	LOC670727 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149257602 GeneID:670727
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474249.1

name	Odz4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124248484 GeneID:23966 MGI:2447063
definition	GO_process : GO:0010003 - gastrulation (sensu Mammalia) [Evidence IMP] codon_start : 1 note : lethal, Chr 7, Rinchik 3 product : odd Oz/ten-m homolog 4 protein_id : NP_035988.2

name	Nars2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543189 CCDS:CCDS21454.1 GeneID:244141 MGI:2142075
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA]; GO:0004815 - aspartate-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]; GO:0006422 - aspartyl-tRNA aminoacylation [Evidence IEA]; GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : asparaginyl-tRNA synthetase 2 (mitochondrial)(putative) protein_id : NP_705819.2

name	Gab2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753932 CCDS:CCDS21455.1 GeneID:14389 MGI:1333854
definition	GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0016477 - cell migration [Evidence IDA]; GO:0007229 - integrin-mediated signaling pathway [Evidence IDA] codon_start : 1 exception : mismatches in translation product : growth factor receptor bound protein 2-associated protein 2 protein_id : NP_034378.1

name	LOC100040457 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149257604 GeneID:100040457
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474338.1

name	Usp35 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149257589 GeneID:244144 MGI:2685339
definition	codon_start : 1 product : ubiquitin specific peptidase 35 isoform 3 protein_id : XP_891616.2

name	EG622320 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702330 CCDS:CCDS21456.1 GeneID:622320 MGI:3643121
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC622320 protein_id : NP_001034128.1

name	Alg8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39841067 GeneID:381903 MGI:2141959
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : alpha-1,3-glucosyltransferase ALG8 protein_id : NP_950200.1

name	Ndufc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18859597 CCDS:CCDS21457.1 GeneID:68197 MGI:1344370
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0003954 - NADH dehydrogenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006120 - mitochondrial electron transport, NADH to ubiquinone [Evidence IEA] codon_start : 1 note : 14.5b subunit of the NADH-ubiquinone dehydrogenase complex product : NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2 protein_id : NP_077182.1

name	Thrsp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678345 CCDS:CCDS21458.1 GeneID:21835 MGI:109126
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 note : Spot 14 product : thyroid hormone-responsive protein protein_id : NP_033407.1

name	Kctd14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58082053 CCDS:CCDS21459.1 GeneID:233529 MGI:1289222
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence IEA] GO_process : GO:0006813 - potassium ion transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : potassium channel tetramerization domain containing 14 product : potassium channel tetramerisation domain containing 14 protein_id : NP_001010826.1

name	Kctd14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:60115713 CCDS:CCDS21459.1 GeneID:233529 MGI:1289222
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence IEA] GO_process : GO:0006813 - potassium ion transport [Evidence IEA] codon_start : 1 note : potassium channel tetramerization domain containing 14 product : potassium channel tetramerisation domain containing 14 protein_id : NP_001012436.1

name	Ints4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794414 CCDS:CCDS21460.1 GeneID:101861 MGI:1917164
definition	GO_component : GO:0032039 - integrator complex [Evidence ISS] GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0016180 - snRNA processing [Evidence ISS] codon_start : 1 product : integrator complex subunit 4 protein_id : NP_081532.1

name	1810020D17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254393 CCDS:CCDS21461.1 GeneID:66273 MGI:1913523
definition	codon_start : 1 product : hypothetical protein LOC66273 protein_id : NP_899074.2

name	Rsf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486905 GeneID:233532 MGI:2682305
definition	GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : hepatitis B virus x associated protein protein_id : NP_001074736.1

name	LOC100040211 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149257591 GeneID:100040211
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474330.1

name	Clns1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19263324 CCDS:CCDS21462.1 GeneID:12729 MGI:109638
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0006821 - chloride transport [Evidence IEA]; GO:0006884 - regulation of cell volume [Evidence IEA] codon_start : 1 note : chloride channel current inducer; chloride channel regulator product : chloride channel, nucleotide-sensitive, 1A protein_id : NP_076160.1

name	Aqp11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30039716 CCDS:CCDS21463.1 GeneID:66333 MGI:1913583
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0019867 - outer membrane [Evidence IEA] GO_function : GO:0008233 - peptidase activity [Evidence IEA]; GO:0015288 - porin activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : aquaporin 11 protein_id : NP_780314.1

name	Pak1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112181194 CCDS:CCDS21464.1 GeneID:18479 MGI:1339975
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005925 - focal adhesion [Evidence TAS]; GO:0030426 - growth cone [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IDA] [Evidence TAS]; GO:0004674 - protein serine/threonine kinase activity [Evidence ISS] [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0016358 - dendrite development [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : activated protein kinase alpha; Cdc42/Rac effector kinase product : p21 (CDKN1A)-activated kinase 1 protein_id : NP_035165.2

name	Gdpd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244142 GeneID:233537 MGI:3606573
definition	GO_function : GO:0008889 - glycerophosphodiester phosphodiesterase activity [Evidence IEA] GO_process : GO:0006071 - glycerol metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : glycerophosphodiester phosphodiesterase domain containing 4 protein_id : NP_808364.1

name	Myo7a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115511010 GeneID:17921 MGI:104510
definition	GO_component : GO:0016324 - apical plasma membrane [Evidence IDA]; GO:0005929 - cilium [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IDA] [Evidence ISS]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0042470 - melanosome [Evidence IDA]; GO:0005902 - microvillus [Evidence ISS]; GO:0016459 - myosin [Evidence IEA]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0005488 - binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0003774 - motor activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0042491 - auditory receptor cell differentiation [Evidence IMP]; GO:0030030 - cell projection organization and biogenesis [Evidence IMP]; GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA]; GO:0035315 - hair cell differentiation [Evidence IMP]; GO:0048839 - inner ear development [Evidence IMP]; GO:0042472 - inner ear morphogenesis [Evidence IMP]; GO:0006909 - phagocytosis [Evidence IMP]; GO:0001845 - phagolysosome formation [Evidence IMP]; GO:0051875 - pigment granule localization [Evidence IMP]; GO:0051904 - pigment granule transport [Evidence IMP]; GO:0048563 - post-embryonic organ morphogenesis [Evidence IMP]; GO:0035058 - sensory cilium biogenesis [Evidence IMP]; GO:0007600 - sensory perception [Evidence IMP]; GO:0050953 - sensory perception of light stimulus [Evidence IMP]; GO:0007605 - sensory perception of sound [Evidence ISS] [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA]; GO:0007601 - visual perception [Evidence IMP] codon_start : 1 note : shaker 1; motor protein product : myosin VIIa protein_id : NP_032689.2

name	LOC666858 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666858
definition	number : 1 pseudo : _no_value

name	LOC622994 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149257606 GeneID:622994
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 mRNAs, 861 ESTs product : hypothetical LOC622994 pseudo : _no_value transcript_id : XR_031862.1

name	LOC100040594 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149257607 GeneID:100040594
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : similar to hCG23490 pseudo : _no_value transcript_id : XR_031892.1

clone name	MSMg01-192B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-169E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-198P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-193F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-193L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452O13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-093I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-211A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251N04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109L18
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-082D04.T7 (MSMg01no082_d04.b1)	MSMg01-082D04.TJ (MSMg01no082_d04.g1)
ACC	AG302623	AG302624
length	1,005	681
length of high quality (start - end)	---	178 (96 - 273)
definition	CHROMAT_FILE: MSMg01no082_d04.b1 PHD_FILE: MSMg01no082_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:37 2005	CHROMAT_FILE: MSMg01no082_d04.g1 PHD_FILE: MSMg01no082_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:37 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	ATTTAGTTATATATANTAAAATTTTGATANATCTAAGTAATTTATATTAC ATGTATATATTCTACTTACTTTACATATTAATCCTTCCGGTACGTATACC GCACGGATTCCCNTGTTTTAGTAAAAATAGATGATCAAGTCACGCGTACC ACTCGTGACTTTAGAAATCACATCTCTCTATTATTAATATACTCCCCGTC TCCTATAAGAAGAGACAACCACACAGCCCGTTGTTCTGCCATCTTGCGCC CTTACACACACAGCACATAATATAAATATATTTATACTCTTCACCTATCT TTAGCTACTACCCCACACCGCACACATATATACTCTCACCATGTTGCCCA TTAATATTTTTGTTCTCGATCCTCCCAAATATAAGAACACGAACCAGCCC GCGCGCGTCAAGATTGTGTTGGAGAGAATAATGACCATCTCCCATAAACA TAAAAAATATTATTGGGGGCCCGCGGGGGCCCCCGGCGGGCCCCTTTTAG AANNNTNTNNNNGNNNNNAAGANTATCCAAAATTTTCCTCCCACACAAAA AAAAAGGAGAGGGGGGGCGTGGCGGCGTGTCGGCGGNNNNNANNNNNNAC AAAAACTTTTTCCCCCCCCTCCNAACCTGGAAGGCGTGGGGGGCCACTCC ATACAGCTTAGATTATGTAAGCGGGGGGAGATTTGAGGGGGCGTTTAGCG GAAANATCAACCAAGGCCTTGTCACAGATTGGGGAAGAGGGAGGGGACAG GTGGGGTAGGATATGTTACATAGACCAGCCGGCGGTTTGGATACCCCCAT AGGGGAGGGAGGGGAGGAGNCCCTGACTTTCATCCCTTGGTACNTGGGGG GAGTGGGTGGGGGGCTCGCGATGGCGTGCTGCGCTTTGTTGCAGAAACCT CTCACGCGGGGAGAAATTCCTACAACGGGGAGCGTGCTACATAGTGGGGG GGTGGCACCACCTATGTTCTTTTATACAAACAATCGGCTGAGTAAGCGTG GCGCG	NTCAATGCTGTGTGTAGCCTGGCGCCGCCTGTTCAACAAATTTAGGTGAA CTATAGAATTCCCGCGAAATTCATAGCTGTTTGGTCTACAGGCTAGATGT CTCAGATGGTCTTTGATAGACACCAGAGTCCTGAAGGAGTGTCTGTGTTG CCAATGAAGGAATGAACTTGCCAACAAACAAGGACAAACATAGCTTCCCT ATTGTATGTTCTTTATATAACTTTATATTATATATATATATCTTGTATGT TCTTTATATAAGCTTCTTTGAGAAAGTGTGGCCTAGTTTAGTGGGTCTTC CCATATTGAATAATCCTTTTAATACAATACCTTACCTTATACCCAAAAGC TTACATTTTGACTAATTCCAGATATGTTCAAGTTGACTATCTTGAATAAC CACCTCAGTTATTATGGTACACTGTCCCAATTAGGAGCTGATGTTAACAT CTAGCTCTCAATTGTTATTTATAATACTCAAGAATTTATATTTTATCATC GGGCATATTCACATCTACATCTTTAAATGTTCAATTCCTTATAAATTACT GCATCGACTATTTAACTGTCTATTCTTGCACCAATATAATCTTCCTCTCT GTTAACTGACTTTTTCATAATACATACAATTATCAGTAATTTCCTCCTTG TTATAAAACTTTATTTCTATCACGATCACTC
quality values	Open. Hide. 6 6 9 7 8 8 8 8 8 8 10 19 11 17 3 0 3 9 8 6 6 6 10 8 8 10 8 8 3 0 3 6 6 6 8 8 8 6 6 6 6 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 7 8 8 11 8 8 8 8 8 8 8 8 8 8 11 6 8 6 6 8 6 6 6 6 8 6 6 6 6 6 6 8 8 8 6 6 8 8 8 8 8 8 8 8 10 8 8 9 6 6 6 6 8 8 8 3 0 3 8 11 15 24 10 10 6 6 8 13 17 13 10 10 10 17 10 8 8 6 6 8 8 10 8 8 6 6 8 8 8 8 6 7 8 7 6 8 8 8 8 8 6 6 11 8 6 8 8 8 7 10 9 6 10 8 8 8 7 7 10 12 8 8 8 8 8 8 8 8 8 8 8 8 10 9 6 6 7 6 8 8 11 9 9 8 8 8 8 8 8 8 8 8 7 6 8 8 12 8 8 8 8 8 8 10 10 8 9 9 10 8 8 9 9 9 9 9 9 9 9 9 10 10 10 10 9 12 11 13 8 8 6 6 8 8 8 8 6 6 6 6 6 8 8 11 11 11 8 8 6 6 6 7 10 10 8 6 6 8 8 8 8 7 6 6 6 8 8 8 6 6 6 6 6 8 8 8 8 8 10 8 8 10 10 8 10 10 8 8 8 9 10 10 9 8 6 6 6 6 7 8 8 8 10 10 10 10 12 8 6 6 8 8 10 10 12 14 8 8 8 10 8 8 11 8 8 8 8 10 10 15 13 9 8 8 8 8 8 8 6 6 6 6 6 10 10 11 10 8 8 6 6 6 6 6 8 8 9 10 10 10 8 10 9 8 8 8 10 8 8 8 8 8 8 9 9 10 15 10 11 11 11 8 8 8 8 11 11 10 6 6 8 8 8 8 8 8 8 8 11 11 11 11 11 9 9 9 13 10 10 10 10 10 8 8 10 10 10 8 8 8 8 8 9 8 7 11 6 9 10 8 13 10 12 11 11 11 11 19 24 16 9 8 9 13 7 7 6 10 10 8 8 8 8 8 8 10 9 9 9 13 17 25 28 39 27 16 12 8 6 6 6 7 10 8 11 11 11 11 11 10 11 8 8 7 6 3 0 0 0 3 0 3 0 0 0 0 3 0 0 0 0 0 3 6 6 3 0 3 7 6 8 6 6 7 7 12 7 7 7 6 6 6 8 8 8 6 6 6 7 7 8 10 12 19 24 34 34 15 12 11 11 10 10 10 10 17 16 17 13 8 8 8 8 8 8 10 8 8 8 8 6 8 8 8 8 8 7 7 7 3 0 0 0 0 0 3 0 0 0 0 0 0 3 6 6 6 8 8 9 8 15 12 12 12 13 17 17 20 24 30 16 8 8 8 8 3 0 3 8 9 8 8 8 6 6 6 6 8 8 8 8 8 9 18 14 12 10 8 8 8 8 8 8 8 14 11 8 8 8 8 8 8 9 11 10 9 8 8 6 6 6 6 10 8 8 6 6 8 9 8 8 11 18 18 24 23 10 8 7 6 8 8 10 6 8 8 8 8 6 11 11 9 10 10 10 9 9 3 0 3 8 7 8 9 13 8 8 8 8 8 8 6 6 8 8 8 6 6 6 8 8 9 9 9 10 13 12 8 7 7 8 8 8 10 8 11 8 7 6 6 6 6 6 7 6 6 10 18 17 16 16 11 11 8 8 8 8 8 8 8 8 9 8 8 6 6 6 6 8 8 11 12 9 11 6 6 6 6 8 8 13 9 9 8 8 8 8 6 8 8 19 19 19 8 7 7 9 9 10 10 9 15 9 9 9 9 12 11 9 7 7 6 3 0 3 10 13 8 8 8 6 6 6 8 6 8 6 6 6 7 7 8 8 8 8 8 3 0 3 11 9 14 8 8 8 10 11 10 10 12 12 10 10 9 9 12 13 14 8 8 6 6 8 8 8 8 8 8 10 11 11 11 11 11 8 8 8 8 12 8 8 9 9 7 6 6 9 7 13 8 10 10 9 9 6 6 6 6 8 6 6 6 6 8 8 8 8 8 10 10 25 22 22 8 9 8 8 8 8 8 10 8 12 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 17 11 12 9 10 9 12 10 9 8 8 8 8 8 6 8 8 8 6 8 6 8 6 7 13 17 11 10 8 8 8 10 10 10 10 10 9 9 11 11 11 13 8 8 7 8 8 8 8 8 8 8 8 6 6 6 6 10 7	Open. Hide. 0 3 9 15 12 10 9 9 9 8 10 6 6 8 6 8 8 8 19 19 18 10 10 10 13 13 22 32 31 17 17 9 12 9 7 6 6 6 6 6 13 15 18 10 10 13 17 17 9 12 14 26 23 33 17 17 9 13 10 11 11 10 10 13 12 10 10 10 16 15 9 9 10 17 17 30 22 28 29 30 29 29 20 20 17 21 19 12 12 11 12 12 19 26 24 19 19 29 32 41 42 23 22 11 11 12 23 21 28 28 37 40 47 44 44 36 36 23 25 38 38 57 48 42 35 22 22 22 21 42 42 43 36 36 27 27 17 19 19 30 30 30 37 42 43 43 43 43 43 50 50 50 50 47 37 38 32 20 20 30 36 36 37 37 37 52 57 57 57 57 52 52 52 43 43 43 32 30 32 36 17 17 17 36 36 47 47 47 57 42 43 35 35 43 43 43 57 57 57 52 45 27 28 12 14 14 38 38 52 54 57 59 57 57 43 37 37 43 43 43 57 57 57 57 57 57 57 57 57 57 54 52 57 52 52 52 43 52 52 57 52 54 44 44 29 32 23 32 26 32 23 32 32 43 43 35 32 32 24 24 17 28 28 42 44 48 44 44 32 32 14 14 13 28 18 25 21 24 15 14 14 19 24 21 11 11 16 24 34 17 14 14 18 17 25 24 29 29 39 39 39 35 35 35 39 42 42 33 30 25 25 19 22 12 19 15 15 15 21 23 18 11 10 10 16 16 17 22 28 34 25 23 15 11 11 12 12 15 15 12 12 12 18 16 12 12 12 11 11 11 20 23 13 13 13 20 23 12 12 10 13 11 16 16 17 23 22 22 19 12 12 12 19 19 18 10 10 10 10 10 11 12 18 12 12 12 10 8 8 10 8 10 10 11 11 12 16 15 15 15 19 21 18 11 11 11 10 10 10 12 15 24 32 21 21 13 11 9 9 9 9 12 12 11 10 10 15 15 19 13 12 18 11 11 9 9 9 9 17 17 19 16 14 10 11 10 9 9 9 13 10 10 10 10 11 11 11 17 15 10 10 15 14 9 8 8 8 8 8 8 8 13 15 8 6 6 8 8 13 13 11 8 8 8 8 8 11 11 11 11 11 12 13 15 22 15 12 8 8 8 6 10 10 10 11 17 18 21 15 12 11 8 8 10 10 8 8 10 10 10 12 9 10 10 10 10 11 12 13 10 9 8 8 8 8 8 8 10 10 10 8 8 8 8 10 10 11 11 11 8 8 8 8 10 8 10 10 10 11 16 20 19 18 11 11 11 8 8 8 8 8 6 6 8 8 8 8 8 6 6 6 6 8 10 10 11 11 11 11 11 11 11 10 8 8 8 8 8 10 10 11 10 8 9 9 10 9 9 9 9 10 11 15 12 12 12 12 12 10 10 10 8 8 8 8 8 8 8 8 8 8 8 8 10 10 10 9 11 11 12 17 12 8 8 8 8 9 10 15 8 8 6 6 8 10 11 9 9 9 9 10 10 11 11 13 11 10 10 8 8 6 6 8 8 8 8 8 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no082_d04.g1 MSMg01no082_d04.g1 CHROMAT_FILE:
MSMg01no082_d04.g1 PHD_FILE: MSMg01no082_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:37 2005
         (178 letters)



>mm_chr7_104261434_104262011
          Length = 578

 Score =  284 bits (147), Expect = 2e-81
 Identities = 178/205 (86%), Gaps = 27/205 (13%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgtctcagatggtctttgatagacaccagagtcctgaaggagtgtctgtgttgccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatgtctcagatggtctttgatagacaccagagtcctgaaggagtgtctgtgttgccaat 260

                                                                       
Query: 61  gaaggaatgaacttgccaacaaacaaggacaaacatagcttccctattgtatgttcttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaggaatgaacttgccaacaaacaaggacaaacatagcttccctattgtatgttcttta 320

                                                                       
Query: 121 tataactttatat------------tatatatatata---------------tcttgtat 153
           |||||||||||||            ||||||||||||               ||||||||
Sbjct: 321 tataactttatatataaagatataatatatatatatagatataatatatatatcttgtat 380

                                    
Query: 154 gttctttatataagcttctttgaga 178
           |||||||||||||||||||||||||
Sbjct: 381 gttctttatataagcttctttgaga 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information