BAC Information

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BAC

Clone NameMSMg01-082I01
Chromosome7 (Build37)
Map Location 136,545,484 - 136,545,714
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a
Downstream geneBrwd2, LOC100043150, Fgfr2, LOC546005, Ate1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082I01.T7 (MSMg01no082_i01.b1)MSMg01-082I01.TJ (MSMg01no082_i01.g1)
ACCAG302855AG302856
length688685
length of high quality
(start - end)
231 (69 - 299)389 (70 - 458)
definitionCHROMAT_FILE: MSMg01no082_i01.b1 PHD_FILE: MSMg01no082_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:59 2005CHROMAT_FILE: MSMg01no082_i01.g1 PHD_FILE: MSMg01no082_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACAATTTGCGGCGCTAAACGACTCCTATATTCACAGGATCCGCGGAATT
CAAGATCTTTGGTATCCCATGTCCTTTTCTGGATTTCATGGCTGCCTGTA
CTCACACATATATAAGCGTACCCAGAGACATACACATACACACACAATTT
AAAAATAAGTAAAAACTCTGACAACAATCCCTATATGTGATTACGCATTA
TTGGCCCCCACGACATCTGACTGACAATAAGAACAAACTCATTGATGTTT
GCTCTTGTTAATCATGTGCTTTCTCAACAATGGCCACCATTACAATGGCA
GCTGGCAAGAACAGAGCCTTGATGTCTCACGGAGTCCTCGGACCGTGAGG
AGTCCTTTGGACAGGTGTCTGAGCCACTGGTCCACTGCTGTATTTACAAC
TCCTCACCCATTCCCACACTCTCTTTGCTCTAAGATGACTATGATCCCTG
TTTGCTGTCCGAAGCCTTTTAACCCTTACTAAACTTCAATTTCTCTCACC
CCGAAATTAATCCTTTTTTCCCCTCCCCAAACACTAACTGTCGACCCTCA
CCTTACTTCAACCTCAGAGGCGAGTATGTGACTCTGGCTAACCCAATCCA
TGCCCCACATCCCACCTCTTTTGACTCCACCGTCAGCCTAAGCCACGACT
GCCTGTCTTGCCAGTAACCCGTAAGTGCTGCCCCCCCC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGAATTGATACCATCTATATAACATTCAT
CAATAGCTACTATTTATGGAAGACTTACCAAATGCCAAGGTTTAATTAAA
AGCTTTACATGCTTTATCTAATCAGATCCTCCCAAAAATTGTAAGGAAAG
TAATACTTGAAGACCCAACTATAGAGATAAGAGAAACAGTATCAAAGAAA
ATGTAAGTGAACTCCTCAGATCCCAGAGTCAGTAAGAATCAGAACCCAGC
CATGAATGCAGTTCCTGGAACTCTAAGAAAACCATTGACAGAGGTTGATT
ATGTCCTAAAATGGGTCATTCTCATCTGAGAGGACCTGTAATAAAAACAT
TATAAATATAATTTTTCATGTATAATACATGTGAAGAATGTTTTATTGGA
AACCAGCCAATTAATGAGAATTTTTAAAAGAACAAGATCTGAACAAGTCA
TGTGCATCTTTATTCCCATCTATTTCATTCTCTGATGTATTTCAAAGGCC
GCTTTGCAGGGCCCTTCATCTGCCTGTAATCTTTGAAAATACTCTGAGGC
CTAATTGTTTCGTCACTTATTTGAATCCCATTTTCTTGGAGATTCTCTAC
TTGGCTTAATAATGTCTTTTTAAAAAATTCGAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_i01.b1 MSMg01no082_i01.b1 CHROMAT_FILE:
MSMg01no082_i01.b1 PHD_FILE: MSMg01no082_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:59 2005
         (231 letters)



>mm_chr7_136545284_136545914
          Length = 631

 Score =  354 bits (183), Expect = e-102
 Identities = 219/231 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtccttttctggatttcatggctgcctgtactcacacatatataagcgtacccagaga 60
           ||||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||
Sbjct: 201 atgtccttttctggatttcgtgggtgcctgtactcacacatatacaagtgtacccagaga 260

                                                                       
Query: 61  catacacatacacacacaatttaaaaataagtaaaaactctgacaacaatccctatatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catacacatacacacacaatttaaaaataagtaaaaactctgacaacaatccctatatgt 320

                                                                       
Query: 121 gattacgcattattggcccccacgacatctgactgacaataagaacaaactcattgatgt 180
           ||||| ||| |||||||||||| |||||||||||||||||||| |||||| ||||||| |
Sbjct: 321 gattaggcaatattggcccccatgacatctgactgacaataaggacaaacacattgatct 380

                                                              
Query: 181 ttgctcttgttaatcatgtgctttctcaacaatggccaccattacaatggc 231
           ||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 381 ttgctcttgttaatcttgtgctttctcaacaatggccaccgttacaatggc 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)