BAC Information

Click to search

BAC

Clone NameMSMg01-083E10
Chromosome7 (Build37)
Map Location 6,645,353 - 6,645,881
singlet/doubletsinglet
Overlap geneZim1
Upstream geneLOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2
Downstream genePeg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083E10.T7 (MSMg01no083_e10.b1)MSMg01-083E10.TJ (MSMg01no083_e10.g1)
ACCAG303445AG303446
length715710
length of high quality
(start - end)
475 (40 - 514)501 (68 - 568)
definitionCHROMAT_FILE: MSMg01no083_e10.b1 PHD_FILE: MSMg01no083_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:57 2005CHROMAT_FILE: MSMg01no083_e10.g1 PHD_FILE: MSMg01no083_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ACAAGGCTCGGTAAAAGGGTGGGGCGGCTCCCTTCAGTTTTCCCAGCATT
TCAAGAGTGAGATGAAAAACAGTGCCCACAAGGCAGCTAGCCTAGGATAC
ACAGCGCAGCATCGAGCAAAAGAGACTGTCTCAAAAACAAGATTCCAACC
TGCACATGAGTGCCGTAAAATGTGCATGTCCTCACATGCACACTTGCACA
CACACACACGTGTACTCGTGTGTGTGTGTGCATGCGCGCGTGCATACAAT
CAAAACAAATAACTATTTTCAAAACTATTAAATATGAGGATTCAAGGACT
GGTAAAGTACACCTACTGTTCTTGCAGAGGCCCTGGGTGTGGTTCTCAGA
ATCCTCATCGCACGGCTCACAAATGCCTGTAACTCCAATTCTAAGAGGAT
CTGACAGCTATGAGCACTTTAACTATATATAGTCCAGACCTCCCCCTCGC
ATACACAGACACAGTATGTAACAGTTAAAAATGAATGCTTTTTAAAAATA
AGAATATCTAATGTTCCATGAACATCAAGTAATCGAACCGTGCTCAGGAT
GGAGTATGAGCTCTTGCGCACTGCTTTCGATTTCAGTGCTATCATAGCTT
TAGGGCTTCTTCCTTCAAGCTGGTCTCATTTTTCCTTCCATCATGTCCCT
AGCCACCAAGTTCTC
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACCCTAAATCTGGATGGCTCCTTCTAATGGCCA
TCCAATGACAAGGACATGAAGGAAGGGATCTTTGCTTTTTGCCTTCTTAC
CCTCACTCTCCGCAGAAAGAATTGTTGTGGCATTCCTTTATCAACAACTC
TTGAGATCTCATTATAGACTGAAGGCAAGCAGCTCTTCAGGAGTCCTCTA
GACCAACAATTCTCAACCTGTGGGTCACAACCCTTTTGGGAGTTAAACAA
CTCTCCCATGGGGTTCCCTAAGACCCCTAAGAAACACAGATGCTTACATT
TTGATTCATAACAATCACAAAATTAGAGTTATGAAGCAGCAATGGAAATA
ATTCTATGGGTGAGAATCACTACAACACGAGGAGCTGTGTTAAAGGGTGG
CAGCATTAGGACGGCTGAGAAAGCTCAGCATGGTTTGCATCTCACAGAGC
TGCAGGATGTATGGGCAGCTGGACAGGTTGGTGAATCTCCTCTCTTCAAC
AACTCTTACTGTTTATAAAATCTTGGGGAGTTGAAGTTGGTGGACTTTCA
TTATTTTTCATTTAACGCATTTTAGTTTTTCCTTTGAATCGTTTGTTTAG
AAATGCCATACGTGTCTTTTCTTATATTTCCTGACCCTTATAGTGCCTGT
TGTTTGTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_e10.b1 MSMg01no083_e10.b1 CHROMAT_FILE:
MSMg01no083_e10.b1 PHD_FILE: MSMg01no083_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:57 2005
         (475 letters)



>mm_chr7_6645183_6646059
          Length = 877

 Score =  731 bits (378), Expect = 0.0
 Identities = 464/532 (87%), Gaps = 64/532 (12%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacaaggctcggtaaaagggtggggcggctcccttcagttttcccagcatttca 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gaattccacaaggct-ggtaaaagggtggggcggctcccttcagttttcccagcatttca 229

                                                                       
Query: 65  agagtgagatgaaaaacagt-----------------------------------gccca 89
           ||||||||||||||||||||                                   |||||
Sbjct: 230 agagtgagatgaaaaacagtgtcaggaacagcccccttcccccccccccccagaggccca 289

                                                                       
Query: 90  caaggcagctagcctaggatacacagcgcagcatcgagcaaaagagactgtctcaaaaac 149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 caaggcagctagcctaggatacacagcgcagcatcgagcaaaagagactgtctcaaaaac 349

                                                                       
Query: 150 aagattccaacctgcacatgagtgccgtaaaatgtgcatgtcctcacatgcacacttgca 209
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aagattccaacctgcacatgagtgccgtaaaatgtgcatgtcctcacatgcacacttgca 409

                                                                       
Query: 210 --cacacacacacgtgtactc------------------------gtgtgtgtgtgtgca 243
             | |||||||||||||||||                        |||||||||||||  
Sbjct: 410 cgcgcacacacacgtgtactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-- 467

                                                                       
Query: 244 tgcgcgcgtgcatacaatcaaaacaaataactattttcaaaactattaaatatgaggatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgcgcgcgtgcatacaatcaaaacaaataactattttcaaaactattaaatatgaggatt 527

                                                                       
Query: 304 caaggactggtaaagtacacctactgttcttgcagaggccctgggtgtggttctcagaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 caaggactggtaaagtacacctactgttcttgcagaggccctgggtgtggttctcagaat 587

                                                                       
Query: 364 cctcatcgcacggctcacaaatgcctgtaactccaattctaagaggatctgacagctatg 423
           |||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cctcatcggatggctcacaactgcctgtaactccaattctaagaggatctgacagctatg 647

                                                               
Query: 424 agcactttaactatatatagtccagacctccccctcgcatacacagacacag 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 agcactttaactatatatagtccagacctccccctcgcatacacagacacag 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 877
Length adjustment: 10
Effective length of query: 465
Effective length of database: 867
Effective search space:   403155
Effective search space used:   403155
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)