BAC Information

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BAC

Clone NameMSMg01-085O05
Chromosome7 (Build37)
Map Location 84,105,721 - 84,106,044
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC434200, EG244071
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085O05.T7 (MSMg01no085_o05.b1)MSMg01-085O05.TJ (MSMg01no085_o05.g1)
ACCAG305343AG305344
length1,3352,563
length of high quality
(start - end)
324 (124 - 447)---
definitionCHROMAT_FILE: MSMg01no085_o05.b1 PHD_FILE: MSMg01no085_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:16 2005CHROMAT_FILE: MSMg01no085_o05.g1 PHD_FILE: MSMg01no085_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTCATTGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CTCTGGCTTTGCTATACCACTTAATTTTTAATATGCCTCTCTCTAACATA
ATAAATTACCCCTTAGTTAAGCAAAACCAAATTAAGGAGAGAGAGAGGCT
CTCCTACTGATGGTTTGGATTCTTCCTGTAAAAAATTTATAATACATGCT
ATTATCAGGACCACCAACCCCCAACCATGACCACAAATACAAAGAAGATA
TTCTATCCAAAGCAAGGTTTAGTATCAGGAAATAGCAAAAAGTCCTGGGC
AAACAGCCAGAGAATCTCACACTGTCTGGGTAAAGAAATGATGCAGGATC
TGCAGGATGCTAAGGCTGTGTGTTGTCTTCTCACTTGACTTAGAGATCTC
ATTTTTTGCCATGGCTTTACTGACATCTTCTTGTATGGTTAAGGAAATAA
AAGCATGTGTATAAGGCTTTCATGATATCACACAGTTTGCGAGTAAAAGA
ACCGCAATTTTAATATGCAAGTTGCCATCATGTGTACCTGTGCTGTTGTT
GAGTTCGCTGTTGTTTTGTTATCATGTCCCTTTTCTTGCTATTTATTCTC
TTTGATATATCATAACTGTTCTTTCTTATCTTTCTTCCTCTCTTTCTTGT
CTGCTCTCATTTTTCATTTTTCTTATTCTTTCTTGCTTCTCTTCTGCTAT
CTTTTTGTCGTATTTATTTTATCCTTTGTCTTCATTTTTAAACTATATCT
ACTTTACTATTTTTTTTATTTTTCCTGTTTTCTATATGTATTTTTTTCTC
TTTATATCTTCCACTTTTCTTCATTAATTCTCTCTTCTTTTGTTTTTTTA
TCTTTCTATTTTTTTTTTTTCCTTTTTTTTTTTTTTTTATTCTTTCTTTT
ACTTTTTTTCCTTTTTTCTTTTATCTCTTTTCTTTTTTTTTTTTATCATT
TTCTAATTTTTTTTTTTCCTATTTATTTTTTTCTTTTATTTCTCTTTTTT
TTTTTATTTTTTTTTTATATTCCTTTTATTCTTATCATCCCTTTATTATT
TCTATTTTCTTCCTATTTTCTTTCTCTGTTCTATTTTTCTTTATATTTTT
ATTTATTTTATATTTATATATTATTCCTTTATTTTTTTTTTACACTTACT
TCTTTATTTTTTCTTTTATCTGTATATTCTTTTCTCTTCCTTACTGTTAT
ATCTCTCTTTCATCTATATATTCTTTCAACCTTTAATCATCTTTATCCTT
TCATCCATCTTTCTTTCCTAATTCTATACTCTCTCTGTTCTGCTAGTTAT
ATCTATTCCTCTCACTTCTTGTTACTTCTCTTTTG
CAATTGACTGTCGGTTCGNCTTTATAAATAGATAGATAGAGAGTTGGTAT
GTTGGGCATCCTCACAGATTCATTCCTATATCCGATATGATGCGGTGTAG
GTACATTGCTTGTATGGGTGGGAGTGTGGGGGTGTACCCCCCCTATTGTA
GGGGGGGGGAGCGGGGGCATAGTGTATCCACTCTCTATAGATATTGATGA
TCGAGAGAGGGCCGCACCCCTCTTTTAGAAGGATGATGGCNCCCTCGCTT
CTTTAGATCTTAATATTGACGTCTTGATGTCGTTCGCGTTTGCTGCTGAC
GATTCATGTTCGTGTGTATCGCAGATTCAGATCGAGTGACTATGCTAGGC
TCTGACAGCTTCCTTTTTCTTAAAGAGAAAAAAAGTACTCGCTCCTGACT
CTTTCTGCTTAATAAGGTGTATAAGTCTACGATCCCAACCTATGGCGGAT
GATGTGTCTAAGAGATTTCCCGTACGTATTGCTCCTCTGTCTTTGTGTAT
GCGATTACTCCAACTGCTATCCTCCTTTTCTCGATAGTGTGCTTCGCATG
GGCTGATTCATATTTTGGTCAAGTCGATTTTTAGTTCCCGCGGTCTGAGA
CGTAATATGTGATATTAGTGTAGGGCTGATCTACTCTCCTGTCCTGAAGA
TGCTAATATCCTTGTGCTGAGTCCTATCTCCTTACGTGATCCAGCTTATG
AAATCGACTAGCGCGTATTTGCTGTATAACCTATGCGTGGATACTAGAGT
ATAGATGTATATTATTATATTATCGTCATATAGTTCTGTTCGCTTTGCTG
GCGGAAAAACAGATATTCGTTTTTTTTGTTTCTGGCGATGATGCAGTGTA
CATATTCGCTTAATTACTAATCATTATCGATACCTTGGGGGGTGTCCGGT
CAACTCGTGCTAGCGGGCCCTTTTTTTTTTTCTTTTTTTCCCCCCCCCCC
CCCGCAGGAAGATCCTCATGTTGGTGGCTTCCTCTCTCCCCCACCAAAAA
AAAAAAAAAGAAGAAGGGGGTGGGTTTTTTCCTCTTTTTTTATATCTAGC
CTCTGTGCTGTGCTGTCGGTCTGGTCGCGTAGAGTACATTTTATCTATCG
TCTTCTGGATTCATGACTCTCTCCGGTAGCACGTGTCGCACGGTCGATAT
TGTTTTTTATGTCTTTGTGTATATGCCTAATCTCTCTAGTGCACTATGGT
TAGATCGAGNTATTTTGCGACCTTTGATGGTTTCGCGTAATATATTAAAA
CCGCACACGCTCGTCTATGCACTAGTTAGTGTGGCGTGAGCTTATTCGCT
CTTGTCTTAGTGGTCCGGACATCACTATTATCTCTTAGACAGATGCCGTT
TCTAGAGCGATATTCTTCATCATGATGTCAACGCTTTGCTGACAGTTAGT
TACATCGAGCGTGTAATTAGNCTAGGGTATGATGGAGTCCTCCATACGTC
TGTTGTAATTAACGTTGTGGACGTACGCTACTGTGAAGATGTCGTTCAGT
GGCTGACTTTAGATGCTCGATGTCCGAGTATCTGTGTGGTCTCTAGTCTG
GGGACTCGACTTGTTAGTGCTTCCGACGCGCGTNTTCTTTTGTTTGTGAA
GCCATGATTATGCTCGACGTACTGATCCGATACTGTGATAGCCGGTGTTA
TTTAATTCTGTTAAGTTATCTGTCTTGTCAGAGACGAGGAGTGGTGAGTC
GTACCGTGCTTGTTATGTCTCTGTCTTTATCTCGGTCACTTCGTGATGAT
ACGTGCGATATCGTGTATGGATGTCTGCTGCATACTACCGTTATCCCTTA
CGCGTACATGTACTATTAAACACGAGCGGCGAGAGCCAGTGGACTGAGCG
CTCAATGTTGTCGTATAGGCCGTCTGGTTATGACCTCTCCGACTTGCTCA
TTCGCTGCGTCTGCCGTATCGGTGTAGTAGCTCATCGTATGCAGCTGTGT
GTAATATCCACTCTGCTGCGACTATGTATTGCGAACATATTAGGTAGTCT
CTATTGTGATACTTGATGGTAAGTGTGCTGCGTAATANTATCACAGCGCG
GCGGTGCTAGAGTTCNCGCTCTTTGCTACTCTGCGTGGTGTAGGTGGCCT
GTCTGTAGTGTAGTGTGTGCGGTTCACNACTATTGTGTATTTTCCTATCT
GTNGCGTCTCTGTGTATCTCAGTATGCGTGTGAATCCGAGAAGACTGATA
TGTCGTGGCGTAGATTGTCGAGATCTACGCGCGTATGATATCGCTTGCGN
CATAATCGCGACTATGTGTATTACTGACTGTGTGCGGTATTATATGTAGT
TCCTATTCTACTAATTATNATATGCTCGGGCTATGTCGTCTAGTGCGCGA
GTGATCGTTCGANGAGAGAGAGGATANATTCGGCTACGCGATCTCGCTCT
CAATCTGTGTGCTCGTGATGTATAAGATTCAGCGCGTATCCGCGCCTGTG
TGTCTCANGATGTGTATCTCGCGATCTCTGTGCGAGACAGANCACGTCAC
GCGCTGTGACTATCTATTGACTGCATGCATGAACTNTTGTGATCATATGT
GTGACGCTATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_o05.b1 MSMg01no085_o05.b1 CHROMAT_FILE:
MSMg01no085_o05.b1 PHD_FILE: MSMg01no085_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:16 2005
         (324 letters)



>mm_chr7_84105521_84106244
          Length = 724

 Score =  572 bits (296), Expect = e-168
 Identities = 317/328 (96%), Gaps = 8/328 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaccaaattaaggagagagagaggctctcctactgatggtttggattcttcctgtaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aaaccaaattaaggagagagagaggctctcctactgatggtttggattcttcctgtaaaa 465

                                                                       
Query: 61  aatttataatacatgctattatcaggaccaccaacccccaaccatgaccacaaatacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aatttataatacatgctattatcaggaccaccaacccccaaccatgaccacaaatacaaa 405

                                                                       
Query: 121 gaagatattctatccaaagcaaggtttagtatcaggaaatagcaaaaagtcctgggcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaagatattctatccaaagcaaggtttagtatcaggaaatagcaaaaagtcctgggcaaa 345

                                                                       
Query: 181 cagccagagaatctcacactgtctgggtaaagaaatgatgcaggatctgcaggatgctaa 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 344 cagccagagaatctcacactgtctggggaaagaaatgatgcaggatctgcaggatgctaa 285

                                                                       
Query: 241 ggctgtgtgttgtcttctcacttgacttagagatctca----ttttttgccatggcttta 296
           ||||||||||||||||||||||||||||||||||||||        ||| ||||||||||
Sbjct: 284 ggctgtgtgttgtcttctcacttgacttagagatctcaggag----ttgtcatggcttta 229

                                       
Query: 297 ctgacatcttcttgtatggttaaggaaa 324
           |||||||||| |||||||||||||||||
Sbjct: 228 ctgacatcttgttgtatggttaaggaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)