BAC Information

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BAC

Clone NameMSMg01-087K23
Chromosome7 (Build37)
Map Location 13,851,589 - 13,851,936
singlet/doubletsinglet
Overlap gene6330408A02Rik
Upstream geneV1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2
Downstream geneLig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512, EG629219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087K23.T7 (MSMg01no087_k23.b1)MSMg01-087K23.TJ (MSMg01no087_k23.g1)
ACCAG306642AG306643
length663767
length of high quality
(start - end)
294 (49 - 342)348 (127 - 474)
definitionCHROMAT_FILE: MSMg01no087_k23.b1 PHD_FILE: MSMg01no087_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:54 2005CHROMAT_FILE: MSMg01no087_k23.g1 PHD_FILE: MSMg01no087_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATAGTCAGAGGATCCGCGGAATTCTTTGTTCATTCCTGAGACCCA
TTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTT
TATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAAGTAATGATC
CTTTCCAAATCTGTTGGTGGTCTTTTTGTCTTACTGACAGTGTCTTTTGC
CTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGCCAATTCTCGATC
TTACAGTACAAGCCATTACTGTTCTGTTCAGGAATTTTTCCCCTGTGCCC
ATATCTTCAAGACTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTC
TGGCTCTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTACCACAAG
GAGATAAGTATGGATCGATTTGCATTCTTCTACACGATAACAACCAGTTG
TGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGCTTTT
AGCTCCCTTGCCGAAGATCAAGTGACCATACGTGTGTGGCTTCATTTCTG
GGTCTTCAATTTCTGTTCCATTGGTCTACTTGTCTGTCCCTATACCAGCA
CCATGCTGTTTTTTATCACTATTGCTCTGCACTAAAGGTTTATGGTCACC
TTGTTGATTCCAC
NNNNNNNNNNNNCCCCCTTTCCCCCCCCCCCCCTCTCCCCCCTAATTTTN
NNCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTACTGTCATCCCCAAACTAGAT
AGACAGCATTTATATATTCCTTTCACTTTGCAGCAGTTTTTCAAGGAAGG
GTATGTTAGCTTTACATCAGTATATTGATATGCCCAAGGCCATAAACTTT
ACAAAGTAAATAAGTTCATTTATTTCATAGTTCTAAAGGTTCCGCTCAAG
AATCGGCAGCCTCATTGACTTGGGCCTCTGGCATGGTGGTACATTATGTG
GGGAGCACATGGCAGAGCAAGCTGCTCAAGGCCCTGGCAAGGCAGGAAGC
AGAAAAGCTTCAAGGACTGGTGTTGAGTCACAGTCTTTCAGATGCAAACC
CTAATGAACTAAAGACCTCCCATAAGGTTCCAAGGAGCCCCACATGTGCA
TGAGCCTGTAACACTATACGCCACTGCAGGATACTGCGGGGACCGAAAAG
CATAGCAAAGATTGCTTTTGGACAGTTCAGAACCTGGCCCTTTTTTCATA
TGTCATTGACCAATACTTGTAATGACACTACGCACTTGCAAAGTTCTTGA
AGTACAACAGACTAAGCGCCTTCGACTGGAAAACCCTCAGTCACTTGTCA
TGTCTTGAGCGTGAAATGTTCCTTAAAGGCTTCACGCGTTTGAATATTGT
GGCCTCAACTTTTGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_k23.g1 MSMg01no087_k23.g1 CHROMAT_FILE:
MSMg01no087_k23.g1 PHD_FILE: MSMg01no087_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:54 2005
         (348 letters)



>mm_chr7_13851389_13852136
          Length = 748

 Score =  650 bits (336), Expect = 0.0
 Identities = 345/348 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttactgtcatccccaaactagatagacagcatttatatattcctttcactttgcagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tttactgtcatccccaaactagatagacagcatttatatattcctttcactttgcagcag 489

                                                                       
Query: 61  tttttcaaggaagggtatgttagctttacatcagtatattgatatgcccaaggccataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tttttcaaggaagggtatgttagctttacatcagtatattgatatgcccaaggccataaa 429

                                                                       
Query: 121 ctttacaaagtaaataagttcatttatttcatagttctaaaggttccgctcaagaatcgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctttacaaagtaaataagttcatttatttcatagttctaaaggttccgctcaagaatcgg 369

                                                                       
Query: 181 cagcctcattgacttgggcctctggcatggtggtacattatgtggggagcacatggcaga 240
           |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 368 cagcctcattgacttgggtctctggcatggtggtacattatgtagggagcacatggcaga 309

                                                                       
Query: 241 gcaagctgctcaaggccctggcaaggcaggaagcagaaaagcttcaaggactggtgttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaagctgctcaaggccctggcaaggcaggaagcagaaaagcttcaaggactggtgttga 249

                                                           
Query: 301 gtcacagtctttcagatgcaaaccctaatgaactaaagacctcccata 348
           |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 248 gtcacagtctttcagatgcataccctaatgaactaaagacctcccata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)