BAC Information

Click to search

BAC

Clone NameMSMg01-088D13
Chromosome7 (Build37)
Map Location 119,886,869 - 119,887,105
singlet/doubletsinglet
Overlap geneTead1
Upstream geneGalntl4, LOC668399, LOC100042678, Usp47, Dkk3, Mical2, Micalcl, Parva, LOC627808
Downstream gene4632411J06Rik, LOC434227, Arntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2, EG434228
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088D13.T7 (MSMg01no088_d13.b1)MSMg01-088D13.TJ (MSMg01no088_d13.g1)
ACCAG307037AG307038
length661763
length of high quality
(start - end)
234 (83 - 316)215 (175 - 389)
definitionCHROMAT_FILE: MSMg01no088_d13.b1 PHD_FILE: MSMg01no088_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:37 2005CHROMAT_FILE: MSMg01no088_d13.g1 PHD_FILE: MSMg01no088_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATCCGCGGAATTCCTACCTGCCTTCTCCACATCTCCACTGTGGACCTCA
CAATCTCTAACTCCCTCCCTCAGATTCCACAGGAACTCCATCTCTGTGAT
ACTTGACCATTTGGAAGGTTTTGAAAACTGTTTCAGGGGCAAGCTGGAGA
GACGGTTTTCTTTCAACAGCATACATGAAAGTCAGATTTGAGTCAAAGGT
TTGTACAAGGATTGCCAACTCTACAAATCCCTGATGCTGCTCAGCTTTAA
TGTAATGTTCTCAAAACCAAATTCCAGCACCACAAAGCTAATTAGGTCTG
CAGGAGGAGAGGCAGGTCTTCTAGAACGACACACGCTAGTAAAAAGGCAT
TTATTCGCTGTTCTGTTCCTTTCCAAAATGAATTCAAAGATCACTCCCGT
GCCGCTGCCCTCGTGTGCACAGGTGCACAGCCGTCTTGATGTGGTCTGGC
CCAGCCTGGCCATTTCATATATAGTGAACTTCATTCATTCCTCAGAGTTC
GCACATTATTGACTCTCCATCCATCACTCTTTCATCTCAGATTGTTCCCC
ACACGGCCTCTTTAATTGGTTCCTGCAAACTGTTTTAAATTGGGTGGTTG
TGGACCCAGTACCAAGTCTCTTCTTTGAACAAGTCAAGTATCTCTCAAGA
TCGTTTCCATA
NNNNNNNNNTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTTCGG
TTGCTCAATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAACTGGGGAAGCAGAGGCTG
GTGACCTCTGGCCAGTTTTCAGCTCCAAGTCAGTGGAAGACCCTGTCTCA
GAGAAGAGAAGAGAAGAGATGAAGCTTGATAGCTGCCAACCTAACCAAAC
ATTAAGTCCAAGTTCCTGTCTCAAGAAAATAAGGTAGAGAGCAATAGGCC
AGGGCTCATTCACTGGCCTCCATACATACTCATATGAGATCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACG
TGCACACACGTTTTGTAAATATGCAAATATTTATCCAAAGTGATAGTGAA
GAAGAGGAGGATTGGATAGAAATGATCTGCTGTGAATATAGCTCAAGGGC
AGTGGTAGAGTTTCATTGAGAGAAAAGGTTGCCTGCTCTGGCGGCCTCTG
TGAAAGAACTATGCGAAGTTAGTCACAGCCCCTCTAAGTCCCACAAGGTC
AGTTCTGGTTGTTTTCTGGTCATATCTGCCCATGGAGATGGAGAATGATG
TATAAGAACATCAGGGCTCCCATTTCTAGTTACACCCTGTATTGAGACGT
TTTTCTAGTTATGGTTGACACTCCCGCCCTATATGTATTCCGCATGGAAT
TGGCTCCTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_d13.b1 MSMg01no088_d13.b1 CHROMAT_FILE:
MSMg01no088_d13.b1 PHD_FILE: MSMg01no088_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:37 2005
         (234 letters)



>mm_chr7_119886669_119887305
          Length = 637

 Score =  443 bits (229), Expect = e-129
 Identities = 234/237 (98%), Gaps = 3/237 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaactccatctctgtgatacttgaccatttggaagg---ttttgaaaactgtttcagggg 57
           ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 437 gaactccatctctgtgatacttgaccatttggaaggtgcttttgaaaactgtttcagggg 378

                                                                       
Query: 58  caagctggagagacggttttctttcaacagcatacatgaaagtcagatttgagtcaaagg 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 caagctggagagacggttttctttcaacagcatacatgaaagtcagatttgagtcaaagg 318

                                                                       
Query: 118 tttgtacaaggattgccaactctacaaatccctgatgctgctcagctttaatgtaatgtt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tttgtacaaggattgccaactctacaaatccctgatgctgctcagctttaatgtaatgtt 258

                                                                    
Query: 178 ctcaaaaccaaattccagcaccacaaagctaattaggtctgcaggaggagaggcagg 234
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctcaaaaccaaattccagcaccacaaagctaattaggtctgcaggaggagaggcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 637
Length adjustment: 9
Effective length of query: 225
Effective length of database: 628
Effective search space:   141300
Effective search space used:   141300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)