BAC Information

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BAC

Clone NameMSMg01-088E19
Chromosome7 (Build37)
Map Location 89,750,123 - 89,750,440
singlet/doubletsinglet
Overlap geneAdamtsl3
Upstream geneHomer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3
Downstream gene1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160, Tmc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088E19.T7 (MSMg01no088_e19.b1)MSMg01-088E19.TJ (MSMg01no088_e19.g1)
ACCAG307095AG307096
length697703
length of high quality
(start - end)
315 (42 - 356)239 (124 - 362)
definitionCHROMAT_FILE: MSMg01no088_e19.b1 PHD_FILE: MSMg01no088_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:43 2005CHROMAT_FILE: MSMg01no088_e19.g1 PHD_FILE: MSMg01no088_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATGGAAAAGTAAGGGTTGGGACTCAAATGCATCTCACCTTACCGCTTAA
TCCCTGGTCCCTGGTCCCCCTGCTAAATCATCTTCCATTTCTCTGCCTGA
CCTGTTTTTGGAAAATGGACCACATTAGGGCATCCCCTTGAGAGGCCTTC
CTCCCTGTCCTACTGGCTCTGCTTAGAGAATGCTGGAGAAAGGCTGGCTG
CTCGGTGCCTCCTCCCTTTCTCTTGTGTTTTTCTGGTAGATCTAGAGGAC
CTACAATGGTGGTTCCCCAGGCCATCCCATTCTGGCCTCCATTTCTGGTC
AGTGAGTACTGTACTTACTCGAAAGACAGTGCGCTTCACACTATGCAATG
GCTTTCTCTGCTCGTGCTACAAGAATGCAGGCAGGTAGCTAACCACAGAG
CAACTCCTGGTGGCCTTCAGCCCTGTTGCCTCCAGCTCATCATCCTTTCT
ATTTGGGCATGCTGGTGACATTTCCTTTCCTTTCTGCAGAGCACTTTTGG
GAACCTGGCAACTGGACACACTGTTCTGCCACTTGTGGATCCTTGAGGGT
CCGGCTTCAGAGGCCCCGGTGTGTGATGGCCAGTGCCCAGGAAGTGAGTG
AAGCCCTGTGTGGTCCCCACAGGAAGTCGCTGGCTGGGTTTCAGTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGCTGAAGAGAGGGACGAAAGATTGTA
GGAGCCAGAGGGATCTAGGACACCAAAAGAAAAACCTTCAGAATCAACTA
ACCTGGGCTCACAGGGGCCCAAAGAGACAACCAACAACCCGTGAACCTGT
ATGGGACTGACCTAGGCCTAGGCACACATGTTACAGCTGTGTAGCTTGGA
GTTCTTGTGGGACTCTAACAGTGGGAGCAGGGGCTGTCTCTGGCTCTTTT
GCCTACTTGTGGGACCTTTTTCCTCCTACATTACTGCCTCATCCAGCCTT
GATAGAAGGTAAGTGTCTAGTCCTACTGCGACTTGATATGCAATGTTTGG
TTAATAACCCGGCCAACATGGCCATTGTTTTAAGGGAAATGAGGAGGCAT
GGACAGTGGGGGTAAGTGGTAGGAAGATAGGGAGTACGTGGAGGCTGGGT
CAAAAGGATCACATGCTCAAGGCTTGCCTTGGCTACCGATTGAGCTCAAG
GCTGTCCTAGGCAACTCAGCGAGACACTGTCTCATAATACGCTAAAACAA
TAAACAGTGCAAACTGCATCTATCACCTCGCTCGCTTCCTAAAGCTTCTG
CGTGCACATACTTATATTTATACTCTTCGGAATAACACTGTTCCTCTATT
TGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_e19.b1 MSMg01no088_e19.b1 CHROMAT_FILE:
MSMg01no088_e19.b1 PHD_FILE: MSMg01no088_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:43 2005
         (315 letters)



>mm_chr7_89749926_89750640
          Length = 715

 Score =  538 bits (278), Expect = e-157
 Identities = 305/318 (95%), Gaps = 7/318 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatggaaaagtaagggttgggactcaaatgcatctcaccttaccgcttaatccct 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 198 gaattcatggaaaagtaagggttgggactcaaatgcatctcaccttactgcttaatccct 257

                                                                       
Query: 65  ggtccctggtccc-------cctgctaaatcatcttccatttctctgcctgacctgtttt 117
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggtccctggtccctggtcctcctgctaaatcatcttccatttctctgcctgacctgtttt 317

                                                                       
Query: 118 tggaaaatggaccacattagggcatccccttgagaggccttcctccctgtcctactggct 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tggaaaatggaccacattagggcatccccttgagaggccttcctccctgtcctactggct 377

                                                                       
Query: 178 ctgcttagagaatgctggagaaaggctggctgctcggtgcctcctccctttctcttgtgt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ctgcttagagaatgctggagaaaggctggctgctcggtgcctcctccctttctcttgtgt 437

                                                                       
Query: 238 ttttctggtagatctagaggacctacaatggtggttccccaggccatcccattctggcct 297
           |||||||||||||||||||||||||||||||||| ||||||||  ||||  |||||||||
Sbjct: 438 ttttctggtagatctagaggacctacaatggtggctccccaggagatcctgttctggcct 497

                             
Query: 298 ccatttctggtcagtgag 315
           ||||||||||||||||||
Sbjct: 498 ccatttctggtcagtgag 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)